Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.1e-237 826.2 412 100.0
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 2.5e-178 629.0 410 77.8
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 1.2e-175 620.2 426 75.4
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 4.8e-169 598.2 381 78.0
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 4.1e-168 595.1 379 74.9
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 6.9e-168 594.3 363 80.2
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 5.8e-167 591.3 378 75.1
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 1.3e-161 573.5 366 75.4
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 9.4e-149 530.8 401 64.6
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 7.9e-148 527.7 381 67.5
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 1.8e-147 526.6 381 68.0
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 1.8e-147 526.6 381 68.0
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.3e-147 526.2 368 69.3
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 3.0e-147 525.8 409 63.1
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 3.9e-147 525.4 366 69.4
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 5.1e-147 525.0 370 68.9
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 5.1e-147 525.0 401 64.1
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 1.1e-146 523.9 366 69.1
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 1.1e-146 523.9 380 67.4
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.0e-146 523.1 375 67.2
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 2.0e-146 523.1 403 64.3
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 3.3e-146 522.3 409 63.8
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 3.3e-146 522.3 392 66.1
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 5.7e-146 521.5 409 62.6
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 5.7e-146 521.5 413 63.0
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 5.7e-146 521.5 380 67.1
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 9.7e-146 520.8 366 68.3
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 2.2e-145 519.6 403 62.8
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 2.2e-145 519.6 390 65.9
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 2.2e-145 519.6 390 65.9
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 2.2e-145 519.6 366 68.0
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 3.7e-145 518.8 376 67.0
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 3.7e-145 518.8 381 66.1
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 3.7e-145 518.8 362 69.1
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.7e-145 518.8 366 67.5
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 3.7e-145 518.8 382 65.2
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 3.7e-145 518.8 380 67.1
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 6.3e-145 518.1 361 68.7
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 8.2e-145 517.7 366 67.5
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.1e-144 517.3 366 68.0
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.1e-144 517.3 380 66.6
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 1.1e-144 517.3 367 67.8
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.4e-144 516.9 379 65.7
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 1.4e-144 516.9 376 66.2
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 1.4e-144 516.9 369 69.1
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 1.4e-144 516.9 370 67.0
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 2.4e-144 516.2 366 68.0
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 3.1e-144 515.8 375 65.9
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 3.1e-144 515.8 379 65.7
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 3.1e-144 515.8 366 67.2
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 3.1e-144 515.8 366 67.2
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 5.3e-144 515.0 381 66.4
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 7.0e-144 514.6 381 65.9
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 7.0e-144 514.6 361 68.4
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 9.1e-144 514.2 392 65.3
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 9.1e-144 514.2 405 63.2
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 9.1e-144 514.2 392 65.3
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 9.1e-144 514.2 431 60.3
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 1.2e-143 513.8 379 65.7
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 1.5e-143 513.5 366 67.5
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.5e-143 513.5 381 64.8
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.5e-143 513.5 380 66.6
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 2.0e-143 513.1 366 66.9
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.0e-143 513.1 380 66.6
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 2.0e-143 513.1 391 65.0
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.6e-143 512.7 392 64.8
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 3.5e-143 512.3 366 67.5
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 4.5e-143 511.9 391 64.7
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 4.5e-143 511.9 392 64.0
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 4.5e-143 511.9 384 64.1
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 5.9e-143 511.5 390 64.9
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 5.9e-143 511.5 390 64.9
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 5.9e-143 511.5 366 67.2
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 7.7e-143 511.1 381 64.0
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.0e-142 510.8 380 66.3
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 1.0e-142 510.8 381 64.6
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 1.0e-142 510.8 366 68.0
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.3e-142 510.4 410 62.4
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 1.3e-142 510.4 376 66.0
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 1.3e-142 510.4 376 66.0
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 2.2e-142 509.6 370 66.5
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 2.9e-142 509.2 366 66.9
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 2.9e-142 509.2 376 66.0
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 5.0e-142 508.4 380 66.1
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 6.5e-142 508.1 380 65.5
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 1.1e-141 507.3 369 65.3
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 2.5e-141 506.1 387 63.8
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 3.2e-141 505.8 369 65.6
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 7.2e-141 504.6 368 66.0
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 2.1e-140 503.1 380 65.0
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 4.7e-140 501.9 379 64.4
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 4.7e-140 501.9 373 64.3
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 8.0e-140 501.1 392 62.5
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 1.4e-139 500.4 373 64.1
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 1.8e-139 500.0 380 64.5
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 1.8e-139 500.0 411 61.6
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 5.2e-139 498.4 376 63.6
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 6.7e-139 498.0 390 62.3
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 1.1e-138 497.3 373 63.5
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 1.5e-138 496.9 358 67.6
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.5e-138 496.9 366 65.0
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 2.0e-138 496.5 393 62.1
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 2.0e-138 496.5 393 61.8
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 2.0e-138 496.5 393 61.8
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 2.6e-138 496.1 393 61.8
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 7.5e-138 494.6 400 60.8
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 7.5e-138 494.6 393 61.8
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 1.7e-137 493.4 393 61.6
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 1.7e-137 493.4 393 61.6
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.7e-137 493.4 380 62.6
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 2.2e-137 493.0 380 63.4
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 2.2e-137 493.0 393 62.6
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 2.2e-137 493.0 393 62.6
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 3.7e-137 492.3 393 61.6
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 4.8e-137 491.9 390 62.6
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 4.8e-137 491.9 409 61.6
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 8.2e-137 491.1 393 61.1
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 8.2e-137 491.1 393 62.3
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 8.2e-137 491.1 393 61.1
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 8.2e-137 491.1 393 62.1
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 5.3e-136 488.4 415 58.6
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.2e-135 487.3 377 63.7
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 2.0e-135 486.5 370 65.9
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 3.6e-132 475.7 358 63.7
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.0e-130 469.9 408 58.1
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 4.4e-130 468.8 361 62.6
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 9.1e-128 461.1 402 59.0
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 2.7e-127 459.5 364 61.3
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 4.5e-127 458.8 393 59.5
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 1.7e-126 456.8 469 50.7
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.7e-126 456.8 359 62.1
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 8.0e-124 448.0 325 66.8
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 5.2e-123 445.3 359 59.9
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.7e-121 440.3 342 63.2
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.4e-120 437.2 367 57.5
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 2.9e-118 429.5 301 68.4
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 6.6e-118 428.3 362 57.5
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.5e-117 427.2 362 57.2
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 8.0e-116 421.4 362 56.9
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 8.0e-116 421.4 296 69.3
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.0e-115 421.0 406 55.4
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 7.5e-114 414.8 337 61.1
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 6.2e-108 395.2 371 58.5
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 7.8e-103 378.3 317 59.3
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 8.1e-100 368.2 357 52.7
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 1.5e-90 337.4 226 76.5
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 9.6e-85 318.2 302 55.0
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 1.6e-68 264.2 160 81.9
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.3e-62 243.8 335 40.6
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 2.1e-60 237.3 223 56.5
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 2.3e-54 217.2 186 59.7
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.9e-45 187.6 139 65.5
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 2.6e-42 177.2 119 73.9
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 2.9e-41 173.7 119 64.7
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.1e-37 161.8 220 44.1
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.1e-27 127.1 80 73.8
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.3e-25 121.7 88 65.9
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 5.5e-24 116.3 81 67.9
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 9.7e-21 105.5 76 61.8
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 3.1e-19 100.5 118 46.6
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 1.4e-14 85.1 52 71.2
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 8.8e-14 82.4 61 59.0
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 6.3e-12 76.3 86 45.3


User provided reference genes

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