Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 0.0e+00 2181.8 1114 100.0
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 0.0e+00 2181.8 1114 100.0
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 0.0e+00 1331.2 1190 65.3
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 0.0e+00 1285.8 1147 65.5
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 0.0e+00 1124.4 1373 51.3
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 3.1e-279 965.7 1157 52.5
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 2.0e-262 909.8 1147 49.8
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 1.3e-237 827.4 1217 46.3
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 1.7e-213 747.3 1249 41.5
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 1.5e-209 734.2 1221 43.4
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 5.4e-207 725.7 1223 42.4
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 9.2e-207 724.9 1223 41.5
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 1.5e-177 627.9 1198 39.9
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 2.7e-174 617.1 1199 39.8
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 1.2e-97 362.5 1274 30.1
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 5.4e-90 337.0 1260 29.5
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 7.8e-89 333.2 1265 29.2
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.9e-79 302.0 1268 28.5
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 5.4e-66 257.3 1165 28.0
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 1.5e-60 239.2 1182 26.6
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.4e-58 232.6 1133 27.8
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 2.4e-58 231.9 1192 26.4
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 3.2e-58 231.5 1106 28.0
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 4.2e-58 231.1 1287 25.8
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 4.6e-57 227.6 1212 27.0
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 1.3e-56 226.1 1121 26.2
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 3.9e-56 224.6 1141 27.4
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.9e-56 224.6 1302 25.7
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 4.3e-55 221.1 1107 26.4
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 4.3e-55 221.1 1292 25.3
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 5.6e-55 220.7 1183 26.2
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.3e-54 219.5 1157 25.5
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 1.6e-54 219.2 1165 26.4
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 4.8e-54 217.6 1098 26.5
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 4.8e-54 217.6 1125 26.8
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 2.4e-53 215.3 884 27.5
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 2.4e-53 215.3 1168 27.3
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.5e-52 212.6 1158 26.4
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 5.8e-52 210.7 1112 26.3
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 4.9e-51 207.6 1088 26.3
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 2.4e-50 205.3 1224 26.2
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 4.3e-47 194.5 1089 25.7
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 1.3e-46 193.0 1192 25.1
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 8.1e-46 190.3 1231 24.9
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.4e-45 188.7 982 26.3
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 2.3e-40 172.2 1111 24.8
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 5.1e-40 171.0 1128 24.6
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.7e-40 170.6 673 27.2
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 6.2e-38 164.1 1127 24.0
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.4e-37 162.9 541 29.9
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 3.8e-35 154.8 992 24.7
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 8.4e-35 153.7 950 26.3
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 3.5e-33 148.3 1272 24.1
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.0e-32 146.7 1047 24.7
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.5e-31 142.9 986 26.3
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 3.3e-31 141.7 1066 24.0
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 5.7e-31 141.0 976 25.1
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 5.7e-31 141.0 1242 22.7
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.6e-30 139.4 552 27.9
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.6e-30 139.4 986 25.1
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.8e-29 136.0 776 25.8
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 3.1e-29 135.2 1073 24.7
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 4.1e-29 134.8 914 25.6
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 1.2e-28 133.3 955 25.8
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.0e-27 130.2 570 27.4
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 2.2e-27 129.0 986 25.5
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 1.1e-26 126.7 709 23.3
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 7.2e-26 124.0 1079 23.4
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 1.2e-25 123.2 990 24.2
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 1.6e-25 122.9 740 26.6
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 2.3e-24 119.0 991 25.0
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 8.7e-24 117.1 374 28.9
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 1.5e-23 116.3 1082 23.5
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 7.4e-23 114.0 632 23.4
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 1.4e-21 109.8 1063 24.4
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 4.5e-20 104.8 939 23.0
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 8.5e-19 100.5 284 32.7
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 4.2e-18 98.2 725 23.3
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 4.2e-18 98.2 928 22.4
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 1.6e-17 96.3 442 24.0
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 6.1e-17 94.4 931 22.8
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 7.9e-17 94.0 780 23.2
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 3.0e-16 92.0 740 22.0
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 2.8e-14 85.5 1076 19.7
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.8e-13 82.8 973 22.5
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 5.3e-13 81.3 527 24.1
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 6.9e-13 80.9 1118 22.5
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 1.5e-12 79.7 506 23.1
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 2.0e-12 79.3 284 28.5
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 3.4e-12 78.6 995 21.3
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 4.5e-12 78.2 320 26.2
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 7.7e-12 77.4 201 32.8
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 1.0e-11 77.0 459 24.6
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 1.0e-11 77.0 661 23.0
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 1.0e-11 77.0 722 21.6
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 1.7e-11 76.3 691 22.1
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 6.5e-11 74.3 54 64.8
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 2.5e-10 72.4 266 25.6
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 4.2e-10 71.6 754 21.2
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 9.4e-10 70.5 471 22.1
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 1.2e-09 70.1 849 21.1
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 2.7e-09 68.9 236 26.7
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 4.7e-09 68.2 360 23.9
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 7.9e-09 67.4 240 25.0
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 2.3e-08 65.9 110 40.0
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 3.0e-08 65.5 674 23.7
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 3.9e-08 65.1 87 41.4
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 5.1e-08 64.7 55 56.4
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 8.8e-08 63.9 503 22.3
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 1.5e-07 63.2 321 25.9
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 2.0e-07 62.8 250 26.4
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 2.6e-07 62.4 415 24.8
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 2.6e-07 62.4 444 21.6
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 2.6e-07 62.4 444 21.6
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 3.3e-07 62.0 68 47.1
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 3.3e-07 62.0 191 30.4
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 9.7e-07 60.5 85 42.4
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.3e-06 60.1 428 21.7
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 1.3e-06 60.1 71 42.3
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.7e-06 59.7 679 23.7
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 2.2e-06 59.3 241 23.7
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 2.2e-06 59.3 241 23.7
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 2.8e-06 58.9 126 33.3
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 2.8e-06 58.9 200 29.0
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 2.8e-06 58.9 200 29.0
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 3.7e-06 58.5 200 29.0
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 3.7e-06 58.5 370 23.2
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 8.2e-06 57.4 451 22.6
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 8.2e-06 57.4 451 22.6


User provided reference genes

Program Settings