Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 3.7e-154 548.1 268 100.0
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 1.4e-97 360.1 200 90.0
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 2.4e-97 359.4 182 97.3
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 1.6e-96 356.7 179 98.3
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 2.1e-96 356.3 204 87.7
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 4.6e-96 355.1 182 95.6
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 1.0e-95 354.0 182 95.6
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 3.0e-95 352.4 182 95.6
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 8.7e-95 350.9 182 95.6
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 1.9e-94 349.7 182 95.1
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 2.1e-93 346.3 182 92.9
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 3.6e-93 345.5 182 93.4
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 4.7e-93 345.1 182 92.3
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 4.7e-93 345.1 182 92.9
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 2.4e-92 342.8 182 91.8
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 3.1e-92 342.4 182 91.8
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 5.3e-92 341.7 182 92.3
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 5.3e-92 341.7 182 91.2
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 6.9e-92 341.3 182 91.2
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 6.9e-92 341.3 182 91.8
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.5e-91 340.1 182 90.7
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 1.5e-91 340.1 182 90.7
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 1.5e-91 340.1 182 90.7
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 2.6e-91 339.3 182 90.7
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 2.6e-91 339.3 182 90.7
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.6e-91 339.3 177 92.7
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 2.6e-91 339.3 182 91.2
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 3.4e-91 339.0 182 90.7
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 4.4e-91 338.6 191 86.4
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 4.4e-91 338.6 182 90.1
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 5.8e-91 338.2 182 90.1
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 5.8e-91 338.2 182 90.1
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 7.6e-91 337.8 182 89.6
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 7.6e-91 337.8 182 89.6
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 9.9e-91 337.4 182 90.1
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 9.9e-91 337.4 182 90.7
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 9.9e-91 337.4 182 90.7
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 1.7e-90 336.7 178 92.7
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 4.9e-90 335.1 182 89.0
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 4.9e-90 335.1 182 89.0
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 4.9e-90 335.1 180 89.4
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 8.4e-90 334.3 182 87.9
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 8.4e-90 334.3 181 89.5
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.1e-89 334.0 182 88.5
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.1e-89 334.0 182 88.5
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 1.1e-89 334.0 182 89.6
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 1.4e-89 333.6 194 84.5
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 1.9e-89 333.2 182 88.5
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 1.9e-89 333.2 194 86.6
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 2.4e-89 332.8 182 87.9
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 2.4e-89 332.8 179 89.9
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 2.4e-89 332.8 179 89.4
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 2.4e-89 332.8 210 80.5
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 3.2e-89 332.4 182 86.8
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 7.1e-89 331.3 182 87.9
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 1.6e-88 330.1 182 87.4
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 2.7e-88 329.3 182 87.4
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 4.6e-88 328.6 182 85.7
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.0e-87 327.4 176 89.8
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 1.3e-87 327.0 178 88.8
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 1.7e-87 326.6 176 89.8
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 3.9e-87 325.5 182 85.7
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 5.1e-87 325.1 176 89.8
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 5.1e-87 325.1 243 72.4
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 8.7e-87 324.3 172 93.0
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 1.5e-86 323.6 176 89.8
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 1.5e-86 323.6 182 86.3
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 1.5e-86 323.6 178 87.6
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 2.5e-86 322.8 182 86.3
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 3.3e-86 322.4 172 90.7
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 3.3e-86 322.4 202 79.7
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 4.3e-86 322.0 182 85.7
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 7.3e-86 321.2 182 85.7
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 9.6e-86 320.9 182 85.7
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 9.6e-86 320.9 173 89.0
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 3.6e-85 318.9 182 85.7
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 3.6e-85 318.9 178 87.6
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 4.8e-85 318.5 196 81.6
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 6.2e-85 318.2 176 86.9
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 6.2e-85 318.2 182 85.2
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 8.1e-85 317.8 182 84.6
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 8.1e-85 317.8 182 84.6
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 3.1e-84 315.8 182 85.2
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 4.5e-83 312.0 182 85.2
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 4.5e-83 312.0 177 85.3
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 2.9e-82 309.3 174 85.6
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 3.8e-82 308.9 173 86.1
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 4.9e-82 308.5 178 85.4
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 3.2e-81 305.8 208 75.5
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 5.4e-81 305.1 174 84.5
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 5.4e-81 305.1 174 84.5
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 5.4e-81 305.1 174 84.5
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 1.2e-80 303.9 174 83.9
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 1.8e-79 300.1 222 73.0
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 4.3e-78 295.4 183 81.4
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 3.1e-76 289.3 155 92.9
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 4.0e-76 288.9 183 79.8
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 9.0e-76 287.7 182 78.6
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 2.6e-75 286.2 190 75.8
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 7.6e-75 284.6 156 89.7
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.9e-73 280.0 177 78.0
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 3.2e-73 279.3 151 90.7
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 5.5e-73 278.5 155 86.5
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.6e-72 276.9 149 86.6
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 4.8e-69 265.4 155 83.9
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 4.5e-67 258.8 191 71.2
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 4.2e-65 252.3 187 73.8
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 7.1e-65 251.5 139 84.2
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 1.3e-61 240.7 125 92.8
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 2.8e-61 239.6 130 86.2
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 3.7e-61 239.2 128 86.7
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 4.2e-57 225.7 184 59.2
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 3.9e-55 219.2 177 57.1
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 8.8e-55 218.0 185 58.4
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 1.5e-54 217.2 155 71.6
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.2e-51 207.6 105 96.2
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.9e-49 200.3 105 90.5
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 7.2e-49 198.4 105 90.5
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 2.1e-48 196.8 105 89.5
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 3.7e-45 186.0 101 87.1
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 2.9e-42 176.4 202 52.0
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 4.2e-41 172.6 100 82.0
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 1.2e-40 171.0 154 61.7
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 8.0e-40 168.3 92 88.0
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 1.8e-39 167.2 92 87.0
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.1e-38 164.5 86 89.5
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 1.8e-36 157.1 91 76.9
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 1.5e-33 147.5 127 56.7
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 2.3e-31 140.2 87 77.0
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.0e-30 137.1 92 76.1
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 4.5e-27 125.9 66 87.9
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.5e-25 120.9 70 87.1
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 1.6e-24 117.5 77 75.3
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 9.5e-17 91.7 48 85.4
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 1.4e-15 87.8 182 32.4
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.5e-14 84.3 182 34.1
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 2.0e-14 84.0 182 31.3
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 3.4e-14 83.2 181 32.0
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 4.4e-14 82.8 182 33.0
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 5.7e-14 82.4 49 81.6
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 7.5e-14 82.0 185 30.8
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 7.5e-14 82.0 182 31.9
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 7.5e-14 82.0 182 33.0
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 9.8e-14 81.6 182 33.0
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 1.3e-13 81.3 182 30.2
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 1.7e-13 80.9 182 32.4
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 2.8e-13 80.1 183 30.1
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 8.3e-13 78.6 181 31.5
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.4e-12 77.8 182 30.2
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 3.2e-12 76.6 182 33.0
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 4.1e-12 76.3 181 30.4
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 4.1e-12 76.3 183 29.5
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 5.4e-12 75.9 182 29.7
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 5.4e-12 75.9 182 29.1
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 7.0e-12 75.5 193 30.1
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 9.2e-12 75.1 181 29.3
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 2.0e-11 73.9 184 31.5
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 2.0e-11 73.9 53 64.2
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 4.5e-11 72.8 181 28.7
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 5.9e-11 72.4 182 29.7
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 7.8e-11 72.0 182 28.6
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 6.6e-10 68.9 180 32.2
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.1e-09 68.2 137 33.6
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 4.3e-09 66.2 198 26.3
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 3.1e-07 60.1 150 29.3
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 6.8e-07 58.9 112 33.9
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 6.8e-07 58.9 133 30.1


User provided reference genes

Program Settings