Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 2.5e-223 778.5 404 100.0
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 4.1e-205 718.0 404 91.8
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 1.6e-201 706.1 388 93.6
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 8.8e-200 700.3 405 89.4
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.2e-196 689.9 404 87.9
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 2.3e-192 675.6 399 87.0
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 1.6e-188 662.9 399 85.7
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 3.5e-188 661.8 398 85.9
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 6.5e-187 657.5 401 85.3
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 1.1e-186 656.8 406 83.5
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 1.1e-186 656.8 406 83.5
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 2.5e-178 629.0 405 79.5
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 3.2e-178 628.6 419 77.6
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 5.7e-175 617.8 399 79.2
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 8.3e-174 614.0 405 78.5
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 1.1e-173 613.6 404 78.0
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.8e-173 612.8 406 77.6
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.1e-173 611.7 404 77.0
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 5.4e-173 611.3 405 77.5
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.2e-172 610.1 404 76.7
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.2e-172 610.1 404 76.7
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 1.6e-172 609.8 409 77.0
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 2.0e-172 609.4 399 78.2
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 4.5e-172 608.2 405 77.5
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 4.5e-172 608.2 404 77.5
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 2.3e-171 605.9 408 78.4
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 2.3e-171 605.9 408 78.4
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 3.8e-171 605.1 408 77.2
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 5.0e-171 604.7 409 76.5
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 5.0e-171 604.7 405 76.8
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 8.6e-171 604.0 409 76.3
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 1.5e-170 603.2 404 77.0
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.5e-170 603.2 409 76.5
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 6.1e-169 597.8 404 75.7
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 8.0e-169 597.4 405 76.0
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.8e-168 596.3 409 75.6
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 5.2e-168 594.7 402 76.1
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.2e-167 593.6 409 75.3
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 2.0e-167 592.8 405 75.3
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 4.4e-167 591.7 408 75.2
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 4.4e-167 591.7 406 76.8
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 5.7e-167 591.3 440 70.7
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 7.5e-167 590.9 405 73.6
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 2.2e-166 589.3 406 75.1
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 2.8e-166 589.0 404 74.0
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 6.3e-166 587.8 404 74.3
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 8.3e-166 587.4 404 74.3
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.1e-165 587.0 404 74.8
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.1e-165 587.0 405 74.6
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 9.2e-165 583.9 409 73.6
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.5e-164 582.0 409 73.3
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 7.8e-164 580.9 400 75.2
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 1.3e-163 580.1 405 74.1
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 5.0e-163 578.2 404 73.8
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 1.1e-162 577.0 405 73.1
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.1e-162 577.0 406 72.7
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 1.9e-162 576.2 402 74.4
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 2.5e-162 575.9 401 73.1
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 2.5e-162 575.9 406 72.4
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 7.3e-162 574.3 401 73.3
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 1.2e-161 573.5 407 73.5
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.6e-161 573.2 402 75.1
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 2.1e-161 572.8 401 72.8
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.1e-161 572.8 406 73.2
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 4.7e-161 571.6 405 75.3
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 1.0e-160 570.5 404 72.8
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.0e-160 570.5 402 73.1
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 5.2e-160 568.2 450 66.4
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 5.2e-160 568.2 406 71.4
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 1.2e-159 567.0 409 71.6
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 2.0e-159 566.2 402 72.4
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 5.7e-159 564.7 411 72.3
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 6.4e-158 561.2 403 72.0
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.1e-157 560.5 402 71.6
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 1.4e-157 560.1 400 73.5
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.4e-157 559.3 405 72.1
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.4e-157 559.3 405 72.1
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 7.0e-157 557.8 401 71.3
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 1.6e-156 556.6 412 71.1
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 4.6e-156 555.1 404 71.8
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 5.9e-156 554.7 406 70.4
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 7.8e-156 554.3 402 71.4
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 3.0e-155 552.4 406 70.9
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 3.0e-155 552.4 406 70.7
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 5.0e-155 551.6 406 70.2
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 8.6e-155 550.8 406 70.0
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 8.6e-155 550.8 405 71.1
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 1.1e-154 550.4 403 70.7
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 1.1e-154 550.4 406 70.2
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 1.1e-154 550.4 407 70.8
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.5e-154 550.1 333 86.8
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 2.5e-154 549.3 407 67.8
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 5.6e-154 548.1 400 69.5
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 7.3e-154 547.7 406 69.5
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 1.2e-153 547.0 453 65.8
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 2.1e-153 546.2 401 70.3
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 4.7e-153 545.0 405 69.6
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 8.0e-153 544.3 406 70.0
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.8e-152 543.1 408 70.6
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 8.9e-152 540.8 414 69.8
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.2e-151 540.4 406 68.5
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.2e-151 540.4 430 65.8
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 1.5e-151 540.0 443 66.6
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.9e-150 535.0 404 70.8
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 2.4e-149 532.7 407 69.5
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 7.0e-149 531.2 406 70.2
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 9.2e-149 530.8 397 66.5
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 1.2e-148 530.4 404 70.0
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 7.8e-148 527.7 406 67.7
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 1.7e-147 526.6 407 65.6
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 1.7e-147 526.6 397 66.0
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 3.0e-147 525.8 404 68.3
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 2.8e-145 519.2 404 67.1
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.1e-144 517.3 404 64.4
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 2.3e-144 516.2 403 69.0
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 3.4e-143 512.3 338 80.8
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 1.6e-140 503.4 417 65.9
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 5.6e-138 495.0 404 61.6
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 1.2e-135 487.3 399 62.7
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 1.1e-133 480.7 376 65.4
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 9.3e-125 451.1 519 51.4
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.3e-118 430.6 374 60.2
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 7.9e-116 421.4 295 74.2
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 9.6e-114 414.5 442 56.3
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 1.6e-113 413.7 404 55.2
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 3.4e-111 406.0 435 55.2
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 7.6e-111 404.8 404 56.7
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 6.9e-104 381.7 406 50.7
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 6.9e-104 381.7 406 50.7
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 5.3e-96 355.5 398 49.2
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 3.8e-94 349.4 406 46.8
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.1e-92 343.6 407 53.8
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 6.7e-83 312.0 400 48.5
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 4.4e-82 309.3 203 79.3
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.3e-70 271.2 358 45.5
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 1.6e-63 247.7 438 39.3
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 3.8e-62 243.0 299 46.8
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 6.5e-62 242.3 271 53.1
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.5e-53 213.8 152 77.0
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.7e-41 174.5 144 69.4
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 6.6e-30 136.0 102 66.7
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 2.8e-28 130.6 128 57.8
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.3e-25 121.7 105 58.1
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 2.7e-23 114.0 418 27.0
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 2.7e-23 114.0 119 60.5
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.3e-22 111.7 94 63.8
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.5e-21 107.5 187 41.7
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 7.3e-21 105.9 73 68.5
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 3.1e-19 100.5 69 75.4
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.5e-18 98.2 85 65.9
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.3e-17 95.1 68 67.6
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 2.9e-17 94.0 445 26.7
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.0e-14 85.5 387 27.1
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 8.1e-12 75.9 451 22.8
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 6.9e-11 72.8 62 64.5
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 1.2e-10 72.0 259 28.2
VMungo0464G1857 Vigna mungo HOM05D004576 ORTHO05D005321 4.2e-08 63.5 40 77.5
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 2.3e-06 57.8 85 42.4


User provided reference genes

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