Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 0.0e+00 1905.2 1048 100.0
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 0.0e+00 1405.6 1171 72.2
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 0.0e+00 1322.0 1142 71.0
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 0.0e+00 1312.0 1165 70.5
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 0.0e+00 1280.4 1172 66.0
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 0.0e+00 1263.4 1168 66.6
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 0.0e+00 1256.9 1210 62.2
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 0.0e+00 1170.2 1173 62.2
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 0.0e+00 1125.2 1096 65.4
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 8.7e-300 1033.9 1180 57.5
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 9.9e-296 1020.4 1180 56.4
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 5.8e-288 994.6 1182 56.6
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 1.7e-279 966.5 1188 54.8
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 1.2e-272 943.7 1170 52.7
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 2.9e-186 656.8 1248 42.0
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 7.3e-182 642.1 1314 39.8
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 1.3e-178 631.3 1133 43.0
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 2.5e-174 617.1 1229 39.5
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 4.8e-173 612.8 1249 40.4
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 6.7e-167 592.4 1264 41.1
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 1.1e-166 591.7 1256 40.6
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 1.5e-166 591.3 982 44.1
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 7.4e-166 589.0 1242 40.7
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.8e-164 584.3 1255 39.2
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 3.4e-163 580.1 1187 42.5
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 5.5e-161 572.8 1238 39.4
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 7.2e-161 572.4 1173 43.1
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.5e-160 570.1 1245 40.2
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 2.3e-159 567.4 815 45.8
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 8.7e-159 565.5 1254 40.5
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 9.7e-158 562.0 1222 39.8
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 1.1e-156 558.5 1218 40.8
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 8.5e-154 548.9 1254 38.4
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 8.5e-154 548.9 1232 38.3
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 1.2e-152 545.0 1230 38.9
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 1.6e-152 544.7 816 42.2
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 6.7e-151 539.3 1235 39.4
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 2.5e-150 537.3 1245 37.8
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 3.7e-149 533.5 1228 38.5
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 1.2e-147 528.5 1099 40.9
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.0e-146 525.4 805 42.5
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 5.0e-146 523.1 1235 38.9
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 6.5e-146 522.7 1235 38.9
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.1e-144 517.7 1231 37.4
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 4.7e-144 516.5 1236 38.6
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 1.0e-143 515.4 1242 38.4
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 8.8e-143 512.3 809 42.0
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 8.8e-143 512.3 1250 38.4
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.7e-141 508.1 1231 37.4
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.1e-140 505.4 1217 38.5
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 2.6e-139 500.7 1217 37.1
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 7.7e-139 499.2 1228 38.3
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 3.8e-138 496.9 1308 34.3
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.6e-134 484.2 1223 37.9
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 3.5e-131 473.8 1211 35.3
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.6e-128 464.9 1219 37.7
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.3e-127 461.1 1162 36.7
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.7e-122 444.9 1233 35.7
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 5.0e-122 443.4 1265 33.4
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 2.3e-119 434.5 1261 32.4
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 9.8e-118 429.1 1284 32.0
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 1.4e-116 425.2 1232 32.1
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 1.5e-113 415.2 1227 32.1
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 1.8e-111 408.3 1191 36.4
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.3e-111 407.9 1153 35.6
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 4.0e-111 407.1 1107 36.5
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 1.6e-107 395.2 825 36.4
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 2.3e-106 391.3 1188 34.2
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.0e-104 382.9 811 35.8
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 7.5e-102 376.3 1074 32.8
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 5.4e-100 370.2 801 34.7
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 3.0e-98 364.4 1226 33.8
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 8.6e-98 362.8 1192 33.7
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.9e-97 361.7 1347 32.3
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 2.8e-96 357.8 1244 34.3
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 8.9e-95 352.8 1131 35.1
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.3e-93 349.0 924 37.3
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 2.9e-93 347.8 1232 31.8
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 3.7e-93 347.4 1074 34.8
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 6.4e-93 346.7 824 34.8
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 1.1e-92 345.9 809 33.4
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 1.4e-92 345.5 1221 32.5
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 2.4e-92 344.7 1250 29.4
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 4.1e-92 344.0 1258 32.8
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 3.9e-90 337.4 743 34.9
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 3.9e-90 337.4 865 36.1
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.4e-87 328.9 772 35.9
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 4.4e-86 323.9 1019 36.8
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 8.4e-85 319.7 732 35.4
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.9e-84 318.5 809 31.9
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 3.2e-84 317.8 1280 30.7
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 1.6e-83 315.5 1062 33.6
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 2.7e-83 314.7 854 32.8
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 3.5e-83 314.3 642 36.9
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 7.8e-83 313.2 798 32.6
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 1.3e-82 312.4 712 35.1
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 3.0e-82 311.2 1224 31.5
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 3.0e-82 311.2 965 34.1
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 3.3e-81 307.8 808 34.3
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 4.7e-80 303.9 1053 33.7
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 1.4e-79 302.4 1061 33.4
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.8e-79 302.0 801 33.2
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 6.9e-79 300.1 1168 31.8
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 5.8e-78 297.0 966 32.4
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.8e-77 294.3 714 32.9
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 8.4e-77 293.1 785 31.2
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 1.1e-76 292.7 880 33.3
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 9.3e-76 289.7 596 36.2
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 1.2e-75 289.3 1179 29.9
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.7e-75 288.1 657 34.2
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.7e-74 285.4 1160 31.9
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 3.0e-74 284.6 1176 29.1
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 1.1e-73 282.7 1298 29.4
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 5.6e-73 280.4 1261 30.9
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 7.3e-73 280.0 636 36.0
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 5.3e-71 273.9 640 35.3
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 9.9e-70 269.6 818 30.2
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 1.7e-69 268.9 802 30.2
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 4.2e-68 264.2 824 29.6
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 1.8e-66 258.8 1098 31.9
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 1.1e-65 256.1 461 38.0
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 1.5e-65 255.8 1213 29.7
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 4.3e-65 254.2 845 29.6
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.1e-63 249.6 1339 29.4
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 1.4e-63 249.2 799 30.0
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 1.4e-63 249.2 799 30.0
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 9.0e-63 246.5 1222 31.3
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.1e-60 239.6 902 29.0
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 3.2e-60 238.0 834 30.7
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 1.5e-57 229.2 1212 29.5
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.5e-57 229.2 771 31.0
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.3e-56 226.1 905 31.3
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 6.0e-51 207.2 417 36.5
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 3.9e-50 204.5 1221 27.8
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.8e-47 195.7 1224 29.2
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 1.7e-45 189.1 684 28.9
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 7.2e-44 183.7 991 26.5
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 6.9e-39 167.2 865 26.8
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.4e-38 164.9 485 30.5
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 4.5e-38 164.5 811 26.9
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.0e-37 163.3 693 27.3
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 9.4e-36 156.8 584 28.8
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 2.7e-35 155.2 748 26.1
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 8.8e-34 150.2 1199 27.8
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 1.5e-33 149.4 1128 28.9
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.2e-29 135.6 715 25.6
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 8.5e-29 133.7 1219 27.3
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.7e-27 128.6 950 25.5
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 3.0e-26 125.2 420 27.9
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 8.2e-24 117.1 1027 28.2
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 5.3e-23 114.4 888 30.4
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.6e-22 112.8 426 40.4
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 5.9e-22 110.9 542 26.4
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 6.1e-19 100.9 633 25.1
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.7e-16 92.8 1035 23.9
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 2.7e-14 85.5 785 23.7
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 5.7e-09 67.8 655 23.2
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.1e-07 62.0 154 31.8
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.1e-07 62.0 154 31.8
C06p30100 Brassica napus HOM05D003962 ORTHO05D032564 4.5e-06 58.2 118 39.8
BolC6t38171H Brassica oleracea HOM05D003962 ORTHO05D032564 4.5e-06 58.2 118 39.8


User provided reference genes

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