Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 3.1e-131 471.9 246 100.0
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 3.3e-109 398.7 252 82.9
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 1.5e-106 389.8 252 83.7
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 1.7e-100 369.8 259 77.6
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 4.5e-98 361.7 259 76.1
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 5.5e-96 354.8 254 74.8
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 1.8e-94 349.7 260 72.7
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 6.3e-84 314.7 253 70.0
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.1e-80 303.9 250 68.8
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.9e-80 303.1 250 68.8
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 7.0e-67 258.1 252 61.9
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 7.7e-66 254.6 248 58.5
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.1e-64 250.8 224 64.7
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 2.5e-64 249.6 250 59.2
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 2.8e-63 246.1 250 58.0
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.0e-62 244.2 228 61.4
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 6.8e-62 241.5 255 58.8
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.2e-61 240.7 250 55.6
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.2e-61 240.7 250 57.6
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 2.0e-61 240.0 226 61.9
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.4e-61 238.8 255 58.0
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 7.5e-61 238.0 251 58.6
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 9.8e-61 237.7 250 55.2
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.4e-59 233.8 250 56.0
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 4.1e-59 232.3 224 60.3
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 5.4e-59 231.9 250 55.6
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 5.4e-59 231.9 250 55.6
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 7.0e-59 231.5 255 56.9
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.2e-59 231.1 238 59.2
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 2.0e-58 229.9 251 55.0
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 2.7e-58 229.6 250 54.4
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.0e-57 227.6 250 53.6
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 5.0e-57 225.3 253 54.2
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.6e-55 220.3 244 53.3
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 2.8e-55 219.5 252 53.2
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 6.2e-55 218.4 253 53.8
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 8.0e-55 218.0 243 54.7
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.2e-53 214.2 254 52.8
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 4.4e-53 212.2 198 62.1
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 7.5e-53 211.5 252 52.0
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 1.4e-51 207.2 225 56.9
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 6.0e-50 201.8 249 51.4
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 2.3e-49 199.9 232 52.2
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 3.9e-49 199.1 244 50.4
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 8.6e-49 198.0 254 50.8
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 2.8e-47 193.0 228 51.3
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 6.8e-46 188.3 242 50.4
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 8.9e-46 188.0 250 52.0
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 4.4e-45 185.7 253 48.2
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 7.5e-45 184.9 253 48.6
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 9.8e-45 184.5 253 48.2
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 6.4e-44 181.8 255 48.2
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 1.9e-43 180.3 242 50.8
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 3.2e-43 179.5 249 47.8
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 5.4e-43 178.7 251 47.0
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.1e-42 176.8 226 47.8
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 5.1e-41 172.2 254 46.1
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.5e-40 170.6 216 49.1
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.5e-40 170.6 216 50.0
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.1e-38 162.9 161 59.6
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 5.2e-38 162.2 248 47.6
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 3.2e-35 152.9 250 44.8
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.6e-34 150.6 246 46.3
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 2.7e-34 149.8 196 50.0
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 1.3e-33 147.5 247 44.5
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.1e-32 144.4 135 61.5
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.5e-32 144.1 250 44.0
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 3.3e-32 142.9 248 45.2
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.3e-32 142.9 252 44.4
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.3e-32 142.5 134 60.4
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 5.6e-32 142.1 134 61.2
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.6e-32 142.1 134 61.2
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.6e-32 142.1 134 61.2
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 5.6e-32 142.1 243 46.1
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 2.1e-31 140.2 248 41.9
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.6e-31 139.4 134 59.0
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 8.1e-31 138.3 252 41.7
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 1.4e-30 137.5 239 43.9
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 1.4e-30 137.5 232 45.7
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 5.2e-30 135.6 232 45.3
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 2.6e-29 133.3 237 43.0
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.7e-28 130.6 204 47.5
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 4.6e-26 122.5 245 39.2
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.0e-25 121.3 216 44.0
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.0e-25 121.3 198 46.5
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.3e-25 120.2 266 38.7
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 5.1e-25 119.0 226 41.6
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.3e-24 116.3 250 36.0
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 2.8e-23 113.2 243 38.3
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 3.1e-22 109.8 194 43.8
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 5.3e-22 109.0 224 36.6
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 5.3e-22 109.0 114 58.8
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 9.0e-22 108.2 241 34.0
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 4.5e-21 105.9 246 35.4
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 5.8e-21 105.5 233 41.2
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 2.9e-20 103.2 218 37.6
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 2.9e-20 103.2 243 33.3
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 2.9e-20 103.2 224 38.4
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 8.4e-20 101.7 80 65.0
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 8.4e-20 101.7 216 39.8
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 1.1e-19 101.3 116 54.3
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.1e-19 101.3 130 48.5
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.4e-19 100.9 254 37.0
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 2.4e-19 100.1 224 37.1
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.2e-19 99.8 242 34.7
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 7.1e-19 98.6 230 36.1
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 9.3e-19 98.2 210 37.1
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.2e-18 97.8 244 34.4
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.6e-18 97.4 250 36.8
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 1.6e-18 97.4 244 34.4
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 4.6e-18 95.9 128 46.9
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 4.6e-18 95.9 92 56.5
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 7.9e-18 95.1 238 33.6
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 7.9e-18 95.1 248 34.3
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 7.9e-18 95.1 235 34.5
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 1.0e-17 94.7 253 35.6
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 1.3e-17 94.4 231 35.9
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.8e-17 94.0 117 49.6
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 5.1e-17 92.4 78 65.4
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 6.7e-17 92.0 222 39.6
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 6.7e-17 92.0 112 49.1
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 8.7e-17 91.7 76 67.1
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 1.5e-16 90.9 78 64.1
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.5e-16 90.9 216 35.2
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.9e-16 90.5 253 35.2
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 9.6e-16 88.2 203 36.0
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 4.8e-15 85.9 235 33.6
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 6.2e-15 85.5 78 60.3
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 8.1e-15 85.1 238 32.4
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 1.4e-14 84.3 100 51.0
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 1.4e-14 84.3 218 34.4
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 6.9e-14 82.0 187 40.6
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 1.3e-12 77.8 212 32.5
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 2.9e-12 76.6 282 31.9
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.8e-12 76.3 246 32.9
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 3.8e-12 76.3 248 31.9
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.8e-12 76.3 230 35.7
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 3.8e-12 76.3 229 31.9
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 4.9e-12 75.9 61 65.6
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 4.9e-12 75.9 256 32.4
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 4.9e-12 75.9 200 33.5
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 8.4e-12 75.1 237 33.3
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 1.4e-11 74.3 227 33.0
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 2.4e-11 73.6 177 33.3
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 4.2e-11 72.8 117 41.9
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 5.5e-11 72.4 113 42.5
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 5.5e-11 72.4 71 54.9
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.7e-10 70.1 146 35.6
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 2.7e-10 70.1 75 50.7
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 4.6e-10 69.3 132 37.1
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 7.9e-10 68.6 98 42.9
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.9e-10 68.6 237 33.8
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.0e-09 68.2 234 33.3
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.0e-09 68.2 220 32.3
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 1.3e-09 67.8 67 52.2
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.3e-09 67.8 65 55.4
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.8e-09 67.4 237 28.7
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.8e-09 67.4 235 32.8
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 1.8e-09 67.4 138 37.7
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 5.1e-09 65.9 124 37.9
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 6.7e-09 65.5 241 30.7
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 1.1e-08 64.7 240 27.9
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.9e-08 63.9 69 52.2
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.3e-08 62.8 234 29.9
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 9.6e-08 61.6 237 30.0
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 1.3e-07 61.2 146 32.2
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 2.8e-07 60.1 204 34.3
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 6.2e-07 58.9 243 30.0
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.4e-06 57.8 74 45.9
ATR0174G047 Amborella trichopoda HOM05D003937 ORTHO05D004583 5.3e-06 55.8 209 31.6
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 5.3e-06 55.8 120 36.7


User provided reference genes

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