Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 2.8e-146 521.9 261 100.0
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 2.4e-142 508.8 261 96.9
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 3.9e-140 501.5 261 95.0
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 6.6e-140 500.7 261 94.6
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 8.6e-140 500.4 261 94.6
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.5e-139 499.6 261 94.6
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 1.9e-139 499.2 261 94.3
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 2.5e-139 498.8 261 94.3
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 2.5e-139 498.8 261 94.3
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 5.6e-139 497.7 261 94.3
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 2.1e-138 495.7 261 93.9
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 2.1e-138 495.7 261 93.9
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 2.1e-138 495.7 261 93.9
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 3.6e-138 495.0 261 93.5
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 5.2e-137 491.1 261 93.9
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 1.2e-136 490.0 261 91.6
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 5.8e-136 487.6 261 92.0
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.7e-135 486.1 261 92.0
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 4.9e-135 484.6 261 92.3
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 6.4e-135 484.2 261 91.2
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 6.4e-135 484.2 261 91.2
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 3.2e-134 481.9 261 90.8
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 9.2e-134 480.3 261 90.4
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 1.6e-133 479.6 261 90.0
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 2.7e-133 478.8 261 90.4
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 3.5e-133 478.4 261 90.0
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 4.6e-133 478.0 261 89.7
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 90.0
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 89.7
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 2.3e-132 475.7 261 89.7
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 90.0
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 89.7
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 6.6e-132 474.2 261 90.0
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 6.6e-132 474.2 261 89.7
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 90.0
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 89.7
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.1e-131 473.4 261 89.7
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 89.3
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 90.0
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 1.9e-131 472.6 261 88.9
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 89.7
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 89.3
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 88.9
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 88.9
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 89.3
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 88.9
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 4.3e-131 471.5 260 89.6
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 5.6e-131 471.1 261 89.7
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 5.6e-131 471.1 261 89.7
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 7.3e-131 470.7 261 88.5
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 7.3e-131 470.7 260 88.8
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 9.5e-131 470.3 261 89.7
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 9.5e-131 470.3 285 83.5
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 9.5e-131 470.3 261 89.7
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 88.9
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 88.9
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 88.9
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 1.6e-130 469.5 276 86.6
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 88.9
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 89.3
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 3.6e-130 468.4 258 90.3
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 3.6e-130 468.4 261 88.1
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 88.9
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 6.2e-130 467.6 261 88.9
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 6.2e-130 467.6 261 88.9
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 88.9
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 88.9
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 87.7
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 2.3e-129 465.7 260 89.2
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 3.1e-129 465.3 261 87.7
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 3.1e-129 465.3 261 87.0
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 4.0e-129 464.9 261 88.5
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 87.0
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 87.4
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 87.7
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 88.5
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 87.7
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 87.0
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 87.7
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 8.9e-129 463.8 260 87.7
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 8.9e-129 463.8 260 87.7
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 87.4
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 1.2e-128 463.4 261 87.4
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 1.2e-128 463.4 261 87.4
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 87.0
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 87.4
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 2.0e-128 462.6 261 87.0
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 2.0e-128 462.6 260 87.7
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 2.6e-128 462.2 260 87.7
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 87.0
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 87.0
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 87.0
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 3.4e-128 461.8 260 86.9
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 4.4e-128 461.5 261 86.2
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 4.4e-128 461.5 261 87.4
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 7.6e-128 460.7 259 87.6
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 7.6e-128 460.7 259 87.6
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 7.6e-128 460.7 265 86.4
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 9.9e-128 460.3 261 87.0
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 1.3e-127 459.9 260 86.9
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 86.6
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 86.6
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 86.2
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 85.8
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 2.9e-127 458.8 264 86.4
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 3.7e-127 458.4 261 87.4
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 3.7e-127 458.4 261 86.2
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 3.7e-127 458.4 261 86.2
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.7e-127 458.4 261 86.2
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 3.7e-127 458.4 256 88.3
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 6.4e-127 457.6 261 87.7
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 1.9e-126 456.1 259 87.3
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 2.4e-126 455.7 261 86.6
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 3.2e-126 455.3 261 85.1
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 5.4e-126 454.5 261 85.4
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 7.1e-126 454.1 269 84.4
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 7.1e-126 454.1 261 85.4
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 7.1e-126 454.1 261 85.4
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 9.2e-126 453.8 261 84.7
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 9.2e-126 453.8 261 85.4
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 2.1e-125 452.6 261 85.4
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 1.0e-124 450.3 261 85.8
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.3e-124 449.1 261 84.7
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 7.3e-123 444.1 260 84.6
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.8e-122 442.2 256 84.4
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 4.7e-122 441.4 261 83.1
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 1.1e-121 440.3 261 82.0
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.1e-121 438.7 277 80.1
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 1.7e-119 433.0 261 83.1
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 6.4e-119 431.0 240 88.3
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-114 416.8 241 85.1
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.6e-114 415.2 241 84.6
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 4.8e-114 414.8 261 79.7
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 4.8e-114 414.8 261 79.7
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 4.4e-112 408.3 261 73.9
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 7.6e-112 407.5 261 80.1
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 3.8e-111 405.2 261 76.2
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 6.4e-111 404.4 261 77.4
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 9.3e-110 400.6 266 77.1
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 7.9e-109 397.5 213 89.7
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 1.9e-107 392.9 222 87.4
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 3.6e-106 388.7 261 76.2
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 4.0e-105 385.2 309 68.9
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 2.0e-104 382.9 254 76.8
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 2.0e-104 382.9 201 91.5
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 7.6e-104 380.9 261 75.9
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 1.7e-103 379.8 240 78.8
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.1e-101 372.9 337 60.2
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 2.1e-101 372.9 195 91.3
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 5.1e-100 368.2 200 90.0
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 9.6e-91 337.4 260 62.7
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 3.7e-90 335.5 256 69.9
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.5e-86 322.8 177 85.9
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 9.7e-83 310.8 161 91.9
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 4.5e-72 275.4 229 60.7
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 1.3e-71 273.9 240 63.3
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 4.8e-58 228.8 113 96.5
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 1.4e-57 227.3 142 81.0
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 1.4e-57 227.3 143 81.1
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 4.2e-54 215.7 135 82.2
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 9.1e-49 198.0 98 92.9
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 1.5e-43 180.6 270 45.9
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 3.4e-43 179.5 109 80.7
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 2.8e-42 176.4 196 53.1
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 1.0e-39 167.9 108 76.9
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 3.3e-38 162.9 135 63.0
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 3.6e-37 159.5 92 83.7
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 1.7e-34 150.6 100 78.0
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 1.7e-34 150.6 195 47.7
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 1.6e-29 134.0 81 81.5
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 5.2e-28 129.0 91 69.2
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 7.8e-24 115.2 111 59.5
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 1.3e-18 97.8 64 75.0
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 4.0e-12 76.3 81 51.9
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 4.9e-10 69.3 56 64.3
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 1.1e-09 68.2 62 61.3
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 3.2e-09 66.6 85 44.7
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 3.5e-08 63.2 42 78.6
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 1.0e-07 61.6 59 52.5
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 1.5e-06 57.8 38 65.8
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 3.3e-06 56.6 34 73.5


User provided reference genes

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