Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16613_v3 Cicer arietinum L. HOM05D007279 ORTHO05D009212 2.3e-122 442.2 215 100.0
Medtr3g088645 Medicago truncatula HOM05D007279 ORTHO05D009212 1.5e-110 402.9 215 92.1
Psat5g084400 Pisum sativum HOM05D007279 ORTHO05D009212 1.0e-101 373.6 215 84.7
Glyma.06G118000 Glycine max HOM05D007279 ORTHO05D009212 3.6e-91 338.6 215 78.1
Glyma.04G245200 Glycine max HOM05D007279 ORTHO05D009212 1.8e-90 336.3 215 77.7
Phvul.009G130400 Phaseolus vulgaris HOM05D007279 ORTHO05D009212 5.1e-90 334.7 211 77.3
VMungo1309G2060 Vigna mungo HOM05D007279 ORTHO05D009212 7.4e-89 330.9 209 76.6
Lj1g0002247 Lotus japonicus HOM05D007279 ORTHO05D009212 8.2e-88 327.4 212 75.0
arahy.Tifrunner.gnm1.ann1.03R76N Arachis hypogaea HOM05D007279 ORTHO05D009212 3.5e-86 322.0 216 73.6
arahy.Tifrunner.gnm1.ann1.G5JU44 Arachis hypogaea HOM05D007279 ORTHO05D009212 3.5e-86 322.0 216 73.6
Lalb_Chr08g0241031 Lupinus albus HOM05D007279 ORTHO05D009212 3.5e-86 322.0 212 76.4
Duzib093G1369 Durio zibethinus HOM05D007279 ORTHO05D009212 3.0e-82 308.9 205 72.2
COL.COLO4_33390 Corchorus olitorius HOM05D007279 ORTHO05D009212 6.7e-82 307.8 207 72.9
Cfa018422 Carpinus fangiana HOM05D007279 ORTHO05D009212 1.7e-80 303.1 210 71.4
RcHm_v2.0_Chr6g0296781 Rosa chinensis HOM05D007279 ORTHO05D009212 2.8e-80 302.4 212 70.8
Dinv27265 Davidia involucrata HOM05D007279 ORTHO05D009212 1.1e-79 300.4 210 70.5
FvH4_2g27960 Fragaria vesca HOM05D007279 ORTHO05D009212 7.0e-79 297.7 213 69.5
Sabra05G0138700 Salix brachista HOM05D007279 ORTHO05D009212 1.2e-78 297.0 211 70.1
Prupe.1G488900 Prunus persica HOM05D007279 ORTHO05D009212 1.6e-78 296.6 212 71.2
Gohir.D03G063100 Gossypium hirsutum HOM05D007279 ORTHO05D009212 2.0e-78 296.2 204 70.6
Gorai.013G108300 Gossypium raimondii HOM05D007279 ORTHO05D009212 2.0e-78 296.2 204 70.6
FAN27G1298 Fragaria x ananassa HOM05D007279 ORTHO05D009212 2.7e-78 295.8 213 69.0
FAN24G0438 Fragaria x ananassa HOM05D007279 ORTHO05D009212 3.5e-78 295.4 213 69.0
PGR044G1698 Punica granatum HOM05D007279 ORTHO05D009212 4.5e-78 295.0 213 70.0
FAN20G2640 Fragaria x ananassa HOM05D007279 ORTHO05D009212 5.9e-78 294.7 208 70.2
Gohir.A02G110900 Gossypium hirsutum HOM05D007279 ORTHO05D009212 1.0e-77 293.9 205 69.3
Potri.005G183000 Populus trichocarpa HOM05D007279 ORTHO05D009212 1.7e-77 293.1 210 69.5
QL09p032239 Quercus lobata HOM05D007279 ORTHO05D009212 1.7e-77 293.1 211 68.7
MSTRG.1407 Avicennia marina HOM05D007279 ORTHO05D009212 3.8e-77 292.0 214 70.1
GSVIVG01008801001 Vitis vinifera HOM05D007279 ORTHO05D009212 5.0e-77 291.6 206 70.4
Manes.02G169000 Manihot esculenta HOM05D007279 ORTHO05D009212 1.1e-76 290.4 211 68.2
CSS0035764 Camellia sinensis var. sinensis HOM05D007279 ORTHO05D009212 4.2e-76 288.5 205 71.2
TWI34G0215 Tripterygium wilfordii HOM05D007279 ORTHO05D009212 1.2e-75 287.0 207 70.0
CAN.G405.7 Capsicum annuum HOM05D007279 ORTHO05D009212 1.8e-74 283.1 212 67.5
CiPaw.16G022500 Carya illinoinensis HOM05D007279 ORTHO05D009212 4.0e-74 282.0 212 67.0
Migut.C01071 Erythranthe guttata HOM05D007279 ORTHO05D009212 2.2e-72 276.2 215 64.2
Lj4A679T22 Lonicera japonica HOM05D007279 ORTHO05D009212 8.3e-72 274.2 196 67.3
Nitab4.5_0003485g0020 Nicotiana tabacum HOM05D007279 ORTHO05D009212 1.1e-71 273.9 212 66.0
Solyc04g057980.3 Solanum lycopersicum HOM05D007279 ORTHO05D009212 1.1e-71 273.9 212 65.1
Peaxi162Scf00066g00422 Petunia axillaris HOM05D007279 ORTHO05D009212 1.4e-71 273.5 212 64.6
Lj4A677T28 Lonicera japonica HOM05D007279 ORTHO05D009212 1.8e-71 273.1 198 67.2
Sopen04g025840 Solanum pennellii HOM05D007279 ORTHO05D009212 1.8e-71 273.1 212 65.6
Atru.chr13.1590 Acer truncatum HOM05D007279 ORTHO05D009212 2.4e-71 272.7 211 65.9
MD15G1133300 Malus domestica HOM05D007279 ORTHO05D009212 3.1e-71 272.3 201 68.7
AUR62007704 Chenopodium quinoa HOM05D007279 ORTHO05D009212 4.1e-71 271.9 210 64.3
PGSC0003DMG400025319 Solanum tuberosum HOM05D007279 ORTHO05D009212 4.1e-71 271.9 212 65.1
Lsat_1_v5_gn_1_7161 Lactuca sativa HOM05D007279 ORTHO05D009212 5.4e-71 271.6 209 66.0
Eucgr.F03852 Eucalyptus grandis HOM05D007279 ORTHO05D009212 7.0e-71 271.2 215 64.7
Nitab4.5_0000317g0110 Nicotiana tabacum HOM05D007279 ORTHO05D009212 9.1e-71 270.8 211 66.8
EL10Ac1g01365 Beta vulgaris HOM05D007279 ORTHO05D009212 4.5e-70 268.5 210 64.3
CANSAT25G0430 Cannabis sativa HOM05D007279 ORTHO05D009212 7.7e-70 267.7 217 67.3
Hma1.2p1_0880F.1_g231840 Hydrangea macrophylla HOM05D007279 ORTHO05D009212 7.7e-70 267.7 216 65.3
TAR628G0029 Trochodendron aralioides HOM05D007279 ORTHO05D009212 2.2e-69 266.2 210 63.3
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 5.0e-69 265.0 195 69.2
AUR62013436 Chenopodium quinoa HOM05D007279 ORTHO05D009212 1.1e-68 263.8 210 62.4
Sed0026443 Sechium edule HOM05D007279 ORTHO05D009212 5.5e-68 261.5 215 63.7
MELO3C012712.2 Cucumis melo HOM05D007279 ORTHO05D009212 1.2e-67 260.4 211 61.6
Nn5g28445 Nelumbo nucifera HOM05D007279 ORTHO05D009212 1.2e-67 260.4 199 65.3
Sabra02G0061000 Salix brachista HOM05D007279 ORTHO05D009212 1.2e-67 260.4 188 69.7
CsaV3_7G022180 Cucumis sativus L. HOM05D007279 ORTHO05D009212 3.6e-67 258.8 209 61.7
Ciclev10002484m.g Citrus clementina HOM05D007279 ORTHO05D009212 4.7e-67 258.5 208 62.5
ClCG09G021820 Citrullus lanatus HOM05D007279 ORTHO05D009212 1.0e-66 257.3 209 63.2
DCAR_016660 Daucus carota HOM05D007279 ORTHO05D009212 1.0e-66 257.3 203 65.5
Cc10_g13680 Coffea canephora HOM05D007279 ORTHO05D009212 1.4e-66 256.9 206 65.5
HanXRQChr02g0045151 Helianthus annuus HOM05D007279 ORTHO05D009212 5.2e-66 255.0 218 63.8
Ah.05g169060 Amaranthus hybridus HOM05D007279 ORTHO05D009212 6.8e-66 254.6 209 63.2
THA.LOC104808254 Tarenaya hassleriana HOM05D007279 ORTHO05D009212 6.8e-66 254.6 207 63.8
Rhsim02G0114000 Rhododendron simsii HOM05D007279 ORTHO05D009212 3.4e-65 252.3 203 63.1
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 5.7e-65 251.5 213 61.5
unitig_46.g18082 Utricularia gibba HOM05D007279 ORTHO05D009212 1.3e-64 250.4 205 61.0
Rhsim02G0113900 Rhododendron simsii HOM05D007279 ORTHO05D009212 3.7e-64 248.8 203 64.0
Aqoxy6G00304 Aquilegia oxysepala HOM05D007279 ORTHO05D009212 4.9e-64 248.4 203 61.6
ECA247G0566 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.3e-64 248.1 137 83.9
vmacro17341 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 1.1e-63 247.3 216 62.0
MBI03_g13490_MAGBIO Magnolia biondii HOM05D007279 ORTHO05D009212 4.1e-63 245.4 198 61.6
CARHR246340 Cardamine hirsuta HOM05D007279 ORTHO05D009212 5.4e-63 245.0 220 59.1
Thhalv10026209m.g Eutrema salsugineum HOM05D007279 ORTHO05D009212 3.5e-62 242.3 207 59.9
Sp7g35570 Schrenkiella parvula HOM05D007279 ORTHO05D009212 4.5e-62 241.9 204 60.8
BcaC01g00366 Brassica carinata HOM05D007279 ORTHO05D009212 1.3e-61 240.4 206 58.3
A08p22940 Brassica napus HOM05D007279 ORTHO05D009212 1.3e-61 240.4 220 55.9
C03p78920 Brassica napus HOM05D007279 ORTHO05D009212 1.7e-61 240.0 206 58.3
BolC3t20136H Brassica oleracea HOM05D007279 ORTHO05D009212 1.7e-61 240.0 206 58.3
BraA08t34256Z Brassica rapa HOM05D007279 ORTHO05D009212 2.9e-61 239.2 220 55.5
AT4G37925 Arabidopsis thaliana HOM05D007279 ORTHO05D009212 5.0e-61 238.4 206 60.2
BcaB03g12324 Brassica carinata HOM05D007279 ORTHO05D009212 6.6e-61 238.0 221 56.1
AL7G12720 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 8.6e-61 237.7 206 60.2
PSO170G3576 Papaver somniferum HOM05D007279 ORTHO05D009212 1.9e-60 236.5 194 60.8
PSO528G0084 Papaver somniferum HOM05D007279 ORTHO05D009212 3.3e-60 235.7 200 61.0
Rhsim02G0113400 Rhododendron simsii HOM05D007279 ORTHO05D009212 4.3e-60 235.3 189 64.0
Carub.0007s0229 Capsella rubella HOM05D007279 ORTHO05D009212 5.6e-60 235.0 203 60.1
Aa31LG6G14860 Aethionema arabicum HOM05D007279 ORTHO05D009212 9.5e-60 234.2 168 69.0
Os04g0539000 Oryza sativa ssp. japonica HOM05D007279 ORTHO05D009212 2.0e-57 226.5 142 73.9
Potri.002G077600 Populus trichocarpa HOM05D007279 ORTHO05D009212 1.7e-56 223.4 175 64.0
ATR0681G064 Amborella trichopoda HOM05D007279 ORTHO05D009212 2.9e-56 222.6 125 80.0
Zm00001eb075370 Zea mays HOM05D007279 ORTHO05D009212 5.4e-55 218.4 175 62.3
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 1.4e-50 203.8 157 66.2
SEGI_28724 Sequoiadendron giganteum HOM05D007279 ORTHO05D009212 1.8e-50 203.4 129 72.9
TPR.G6347 Trifolium pratense HOM05D007279 ORTHO05D009212 3.0e-45 186.0 94 91.5
Thecc.08G133700 Theobroma cacao HOM05D007279 ORTHO05D009212 1.1e-44 184.1 155 61.3
Pp3c1_14910 Physcomitrium patens HOM05D007279 ORTHO05D009212 2.3e-42 176.4 151 58.3
CBR_g26037 Chara braunii HOM05D007279 ORTHO05D009212 2.0e-41 173.3 126 61.9
SMO339G0044 Selaginella moellendorffii HOM05D007279 ORTHO05D009212 7.5e-41 171.4 113 69.0
AL3G19570 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 1.6e-38 163.7 137 62.0
AagrBONN_evm.TU.Sc2ySwM_344.1177 Anthoceros agrestis HOM05D007279 ORTHO05D009212 6.0e-38 161.8 142 55.6
Mapoly0063s0013 Marchantia polymorpha HOM05D007279 ORTHO05D009212 2.1e-35 153.3 112 63.4
vmacro17338 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 1.1e-31 141.0 175 50.3
TAR623G1519 Trochodendron aralioides HOM05D007279 ORTHO05D009212 2.7e-30 136.3 179 44.7
vmacro17312 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 1.8e-26 123.6 115 57.4
SalBow7G1271 Salvia bowleyana HOM05D007279 ORTHO05D009212 6.9e-26 121.7 198 38.9
Zm00001eb427570 Zea mays HOM05D007279 ORTHO05D009212 2.9e-24 116.3 78 71.8
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 1.9e-15 87.0 137 39.4


User provided reference genes

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