Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16579_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 2.0e-68 262.3 133 100.0
Medtr3g088470 Medicago truncatula HOM05D006084 ORTHO05D007449 1.1e-63 246.5 131 93.1
TPR.G13476 Trifolium pratense HOM05D006084 ORTHO05D007449 7.7e-60 233.8 131 87.0
Lj1g0023236 Lotus japonicus HOM05D006084 ORTHO05D007449 3.0e-56 221.9 131 85.5
Glyma.04G247000 Glycine max HOM05D006084 ORTHO05D007449 5.3e-53 211.1 126 81.7
Glyma.06G115700 Glycine max HOM05D006084 ORTHO05D007449 2.0e-52 209.1 126 80.2
Phvul.009G127800 Phaseolus vulgaris HOM05D006084 ORTHO05D007449 2.0e-52 209.1 126 81.7
Cfa007418 Carpinus fangiana HOM05D006084 ORTHO05D007449 1.6e-49 199.5 120 77.5
Lalb_Chr10g0093921 Lupinus albus HOM05D006084 ORTHO05D007449 2.7e-49 198.7 123 80.5
QL02p076043 Quercus lobata HOM05D006084 ORTHO05D007449 3.6e-49 198.4 122 74.6
QL02p076078 Quercus lobata HOM05D006084 ORTHO05D007449 3.6e-49 198.4 122 74.6
Haze_14684 Corylus avellana HOM05D006084 ORTHO05D007449 4.7e-49 198.0 119 77.3
Atru.chr6.2220 Acer truncatum HOM05D006084 ORTHO05D007449 1.8e-48 196.1 123 77.2
TAR371G1194 Trochodendron aralioides HOM05D006084 ORTHO05D007449 1.8e-48 196.1 120 80.0
Dinv33481 Davidia involucrata HOM05D006084 ORTHO05D007449 6.7e-48 194.1 118 79.7
Actinidia35746 Actinidia chinensis HOM05D006084 ORTHO05D007449 8.8e-48 193.7 123 77.2
CiPaw.03G039200 Carya illinoinensis HOM05D006084 ORTHO05D007449 1.1e-47 193.4 123 74.8
Prupe.3G286100 Prunus persica HOM05D006084 ORTHO05D007449 1.5e-47 193.0 118 79.7
Rhsim08G0053800 Rhododendron simsii HOM05D006084 ORTHO05D007449 4.4e-47 191.4 125 75.2
MD17G1033600 Malus domestica HOM05D006084 ORTHO05D007449 5.7e-47 191.0 118 77.1
Manes.17G116000 Manihot esculenta HOM05D006084 ORTHO05D007449 7.4e-47 190.7 123 76.4
Thecc.04G011100 Theobroma cacao HOM05D006084 ORTHO05D007449 7.4e-47 190.7 122 76.2
CSS0000489 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 9.7e-47 190.3 118 78.0
CSS0035017 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 9.7e-47 190.3 118 78.0
arahy.Tifrunner.gnm1.ann1.DMWP0X Arachis hypogaea HOM05D006084 ORTHO05D007449 2.2e-46 189.1 120 78.3
Eucgr.I01785 Eucalyptus grandis HOM05D006084 ORTHO05D007449 2.8e-46 188.7 123 73.2
Aqoxy3G02941 Aquilegia oxysepala HOM05D006084 ORTHO05D007449 8.2e-46 187.2 119 76.5
arahy.Tifrunner.gnm1.ann1.2LS7ZQ Arachis hypogaea HOM05D006084 ORTHO05D007449 8.2e-46 187.2 120 77.5
Gohir.A07G221200 Gossypium hirsutum HOM05D006084 ORTHO05D007449 8.2e-46 187.2 122 73.0
arahy.Tifrunner.gnm1.ann1.48HX9C Arachis hypogaea HOM05D006084 ORTHO05D007449 1.8e-45 186.0 133 70.7
A02p02680 Brassica napus HOM05D006084 ORTHO05D007449 1.8e-45 186.0 123 74.0
BraA02t05237Z Brassica rapa HOM05D006084 ORTHO05D007449 1.8e-45 186.0 123 74.0
Potri.001G349500 Populus trichocarpa HOM05D006084 ORTHO05D007449 5.3e-45 184.5 118 73.7
ATR1096G027 Amborella trichopoda HOM05D006084 ORTHO05D007449 7.0e-45 184.1 118 76.3
BcaNung03101 Brassica carinata HOM05D006084 ORTHO05D007449 7.0e-45 184.1 118 76.3
Gohir.D07G227900 Gossypium hirsutum HOM05D006084 ORTHO05D007449 7.0e-45 184.1 122 73.0
Sp6g29330 Schrenkiella parvula HOM05D006084 ORTHO05D007449 7.0e-45 184.1 123 74.0
Oeu004718.1 Olea europaea HOM05D006084 ORTHO05D007449 1.2e-44 183.3 117 78.6
CANSAT64G0964 Cannabis sativa HOM05D006084 ORTHO05D007449 1.5e-44 183.0 124 68.5
CDE08G0643 Ceratophyllum demersum HOM05D006084 ORTHO05D007449 1.5e-44 183.0 118 74.6
RcHm_v2.0_Chr2g0172221 Rosa chinensis HOM05D006084 ORTHO05D007449 1.5e-44 183.0 118 74.6
Thhalv10015025m.g Eutrema salsugineum HOM05D006084 ORTHO05D007449 2.0e-44 182.6 123 72.4
HanXRQChr07g0198791 Helianthus annuus HOM05D006084 ORTHO05D007449 2.0e-44 182.6 118 75.4
Hma1.2p1_0846F.1_g227700 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 2.0e-44 182.6 120 73.3
ECA238G3069 Erigeron canadensis HOM05D006084 ORTHO05D007449 2.6e-44 182.2 123 73.2
THA.LOC104821076 Tarenaya hassleriana HOM05D006084 ORTHO05D007449 2.6e-44 182.2 123 72.4
ATR0730G058 Amborella trichopoda HOM05D006084 ORTHO05D007449 3.5e-44 181.8 119 75.6
AL6G25480 Arabidopsis lyrata HOM05D006084 ORTHO05D007449 3.5e-44 181.8 123 73.2
A03p06720 Brassica napus HOM05D006084 ORTHO05D007449 3.5e-44 181.8 123 72.4
HPP92_022049 Vanilla planifolia HOM05D006084 ORTHO05D007449 3.5e-44 181.8 123 72.4
BcaC03g13452 Brassica carinata HOM05D006084 ORTHO05D007449 4.5e-44 181.4 123 72.4
C02p07250 Brassica napus HOM05D006084 ORTHO05D007449 4.5e-44 181.4 123 72.4
BolC2t06657H Brassica oleracea HOM05D006084 ORTHO05D007449 4.5e-44 181.4 123 72.4
HanXRQChr14g0450361 Helianthus annuus HOM05D006084 ORTHO05D007449 4.5e-44 181.4 118 74.6
Carub.0006s1288 Capsella rubella HOM05D006084 ORTHO05D007449 5.9e-44 181.0 123 72.4
BraA03t10005Z Brassica rapa HOM05D006084 ORTHO05D007449 1.3e-43 179.9 123 72.4
Cc07_g02120 Coffea canephora HOM05D006084 ORTHO05D007449 1.7e-43 179.5 120 73.3
AT5G14710 Arabidopsis thaliana HOM05D006084 ORTHO05D007449 2.9e-43 178.7 123 71.5
BcaB01g05101 Brassica carinata HOM05D006084 ORTHO05D007449 2.9e-43 178.7 123 71.5
C03p07740 Brassica napus HOM05D006084 ORTHO05D007449 2.9e-43 178.7 123 71.5
BolC3t13274H Brassica oleracea HOM05D006084 ORTHO05D007449 2.9e-43 178.7 123 71.5
GSVIVG01032459001 Vitis vinifera HOM05D006084 ORTHO05D007449 2.9e-43 178.7 118 75.4
CARHR198600 Cardamine hirsuta HOM05D006084 ORTHO05D007449 3.8e-43 178.3 123 70.7
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 3.8e-43 178.3 133 65.4
FvH4_6g50830 Fragaria vesca HOM05D006084 ORTHO05D007449 5.0e-43 177.9 118 72.9
CAN.G206.22 Capsicum annuum HOM05D006084 ORTHO05D007449 6.5e-43 177.6 118 72.9
FAN14G2625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.4e-42 176.4 118 72.0
Sc03g0007970 Simmondsia chinensis HOM05D006084 ORTHO05D007449 1.4e-42 176.4 118 71.2
PGSC0003DMG400000490 Solanum tuberosum HOM05D006084 ORTHO05D007449 1.4e-42 176.4 119 71.4
Aa31LG11G14750 Aethionema arabicum HOM05D006084 ORTHO05D007449 4.2e-42 174.9 123 70.7
PGR142G2538 Punica granatum HOM05D006084 ORTHO05D007449 4.2e-42 174.9 110 75.5
TWI12G0619 Tripterygium wilfordii HOM05D006084 ORTHO05D007449 4.2e-42 174.9 123 70.7
MELO3C005689.2 Cucumis melo HOM05D006084 ORTHO05D007449 5.5e-42 174.5 119 71.4
CsaV3_5G027340 Cucumis sativus L. HOM05D006084 ORTHO05D007449 5.5e-42 174.5 119 69.7
MSTRG.3166 Avicennia marina HOM05D006084 ORTHO05D007449 7.2e-42 174.1 116 71.6
Migut.H00108 Erythranthe guttata HOM05D006084 ORTHO05D007449 9.4e-42 173.7 116 74.1
Sed0018290 Sechium edule HOM05D006084 ORTHO05D007449 9.4e-42 173.7 119 68.9
FAN05G5625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.2e-41 173.3 116 72.4
COL.COLO4_28991 Corchorus olitorius HOM05D006084 ORTHO05D007449 1.6e-41 172.9 139 65.5
arahy.Tifrunner.gnm1.ann1.GQ5XJ3 Arachis hypogaea HOM05D006084 ORTHO05D007449 2.1e-41 172.6 137 65.7
Sopen02g031550 Solanum pennellii HOM05D006084 ORTHO05D007449 3.6e-41 171.8 119 70.6
BcaC04g19017 Brassica carinata HOM05D006084 ORTHO05D007449 6.1e-41 171.0 115 73.0
Hund02345 Selenicereus undatus HOM05D006084 ORTHO05D007449 8.0e-41 170.6 121 65.3
Hma1.2p1_0056F.1_g031653 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 3.0e-40 168.7 105 75.2
PSO210G7688 Papaver somniferum HOM05D006084 ORTHO05D007449 3.9e-40 168.3 118 70.3
PSO782G1469 Papaver somniferum HOM05D006084 ORTHO05D007449 5.2e-40 167.9 118 70.3
Os10g0395500 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 6.7e-40 167.5 131 62.6
PSO566G0352 Papaver somniferum HOM05D006084 ORTHO05D007449 6.7e-40 167.5 126 65.9
unitig_746.g26552 Utricularia gibba HOM05D006084 ORTHO05D007449 6.7e-40 167.5 114 71.9
Hma1.2p1_1415F.1_g281960 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 1.5e-39 166.4 105 75.2
Zm00001eb048120 Zea mays HOM05D006084 ORTHO05D007449 2.6e-39 165.6 131 62.6
Ca_03224_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 4.4e-39 164.9 82 100.0
SGA_v2.0_scaffold2848G54225 Striga asiatica HOM05D006084 ORTHO05D007449 7.4e-39 164.1 114 70.2
Peaxi162Scf00129g01228 Petunia axillaris HOM05D006084 ORTHO05D007449 3.7e-38 161.8 105 73.3
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 8.2e-38 160.6 106 71.7
C09p62430 Brassica napus HOM05D006084 ORTHO05D007449 1.8e-37 159.5 120 65.8
ClCG09G019010 Citrullus lanatus HOM05D006084 ORTHO05D007449 3.1e-37 158.7 141 57.4
BolC9t59081H Brassica oleracea HOM05D006084 ORTHO05D007449 1.6e-36 156.4 120 65.0
Gorai.001G262800 Gossypium raimondii HOM05D006084 ORTHO05D007449 1.6e-36 156.4 104 72.1
EL10Ac3g07214 Beta vulgaris HOM05D006084 ORTHO05D007449 4.5e-36 154.8 113 65.5
ClCG00G003490 Citrullus lanatus HOM05D006084 ORTHO05D007449 1.0e-35 153.7 139 56.8
Pp3c26_1260 Physcomitrium patens HOM05D006084 ORTHO05D007449 2.9e-35 152.1 127 57.5
MBI19_g17406_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 8.5e-35 150.6 128 60.2
Mapoly0005s0179 Marchantia polymorpha HOM05D006084 ORTHO05D007449 5.5e-34 147.9 118 61.0
Sabra16G0228900 Salix brachista HOM05D006084 ORTHO05D007449 7.2e-34 147.5 210 42.4
Nn3g16859 Nelumbo nucifera HOM05D006084 ORTHO05D007449 2.1e-33 146.0 89 78.7
MBI19_g07248_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 2.7e-33 145.6 130 59.2
Lsat_1_v5_gn_2_91880 Lactuca sativa HOM05D006084 ORTHO05D007449 6.1e-33 144.4 121 62.0
Cpa.g.c30698.2 Carica papaya HOM05D006084 ORTHO05D007449 3.0e-32 142.1 88 77.3
SHI16396 Sapria himalayana HOM05D006084 ORTHO05D007449 6.8e-32 141.0 100 65.0
AUR62031990 Chenopodium quinoa HOM05D006084 ORTHO05D007449 2.4e-29 132.5 89 69.7
SMO367G0706 Selaginella moellendorffii HOM05D006084 ORTHO05D007449 3.1e-29 132.1 107 60.7
Nitab4.5_0007141g0020 Nicotiana tabacum HOM05D006084 ORTHO05D007449 4.1e-29 131.7 107 63.6
Duzib264G1216 Durio zibethinus HOM05D006084 ORTHO05D007449 7.0e-29 131.0 86 70.9
Solyc02g086780.4 Solanum lycopersicum HOM05D006084 ORTHO05D007449 2.9e-27 125.6 81 77.8
Ciclev10017692m.g Citrus clementina HOM05D006084 ORTHO05D007449 1.2e-25 120.2 68 80.9
DCAR_011237 Daucus carota HOM05D006084 ORTHO05D007449 6.1e-25 117.9 73 75.3
Nitab4.5_0006281g0070 Nicotiana tabacum HOM05D006084 ORTHO05D007449 2.0e-23 112.8 74 75.7
CBR_g5628 Chara braunii HOM05D006084 ORTHO05D007449 7.5e-23 110.9 122 44.3
MELO3C033557.2 Cucumis melo HOM05D006084 ORTHO05D007449 2.7e-20 102.4 95 56.8
BraA10t44460Z Brassica rapa HOM05D006084 ORTHO05D007449 5.9e-20 101.3 90 60.0
arahy.Tifrunner.gnm1.ann1.2H702Y Arachis hypogaea HOM05D006084 ORTHO05D007449 1.0e-19 100.5 61 78.7
Os01g0339600 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 3.8e-19 98.6 70 68.6
AagrBONN_evm.TU.Sc2ySwM_228.3157 Anthoceros agrestis HOM05D006084 ORTHO05D007449 1.9e-18 96.3 81 50.6
Cre13.g571000 Chlamydomonas reinhardtii HOM05D006084 ORTHO05D007449 1.9e-18 96.3 119 39.5
AUR62030334 Chenopodium quinoa HOM05D006084 ORTHO05D007449 4.2e-18 95.1 67 62.7
A10p23960 Brassica napus HOM05D006084 ORTHO05D007449 1.1e-10 70.5 131 38.2
Dinv35076 Davidia involucrata HOM05D006084 ORTHO05D007449 7.3e-10 67.8 45 68.9
MCO07G269 Micromonas commoda HOM05D006084 ORTHO05D007449 9.5e-10 67.4 115 33.9
SEGI_25092 Sequoiadendron giganteum HOM05D006084 ORTHO05D007449 1.8e-08 63.2 62 46.8


User provided reference genes

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