Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 5.8e-150 534.3 284 100.0
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 1.3e-85 320.5 269 69.1
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 4.1e-79 298.9 278 62.6
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 1.1e-58 231.1 290 51.4
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 3.4e-57 226.1 296 50.0
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 3.2e-55 219.5 251 55.8
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 3.2e-55 219.5 251 55.8
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 7.1e-55 218.4 248 55.2
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 9.3e-55 218.0 306 50.7
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 7.4e-52 208.4 290 48.6
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.6e-51 207.2 266 52.3
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.6e-51 207.2 286 51.4
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 1.8e-50 203.8 267 51.3
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.8e-50 203.8 297 45.1
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 7.6e-49 198.4 221 55.2
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 4.9e-48 195.7 241 53.5
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 6.4e-48 195.3 291 47.8
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 8.4e-48 194.9 251 50.6
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.4e-47 194.1 263 46.4
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 1.4e-47 194.1 294 44.9
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 1.9e-47 193.7 300 43.7
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.9e-47 193.7 293 45.7
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 9.3e-47 191.4 234 54.7
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 1.2e-46 191.0 265 45.3
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 2.1e-46 190.3 266 49.6
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 2.7e-46 189.9 252 52.8
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 4.6e-46 189.1 226 54.9
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.0e-45 188.0 297 45.1
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.9e-45 186.0 251 49.0
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 3.9e-45 186.0 221 54.3
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 1.9e-44 183.7 220 53.2
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 5.6e-44 182.2 276 45.7
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 5.6e-44 182.2 216 53.7
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 7.4e-44 181.8 304 46.1
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.6e-43 180.6 196 58.2
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 1.6e-43 180.6 280 46.4
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.6e-43 180.6 216 54.2
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 2.1e-43 180.3 212 53.8
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.8e-43 179.9 197 57.4
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 8.1e-43 178.3 222 51.8
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.1e-42 177.9 251 50.6
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.4e-42 177.6 222 51.8
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.4e-42 177.6 222 51.8
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.4e-42 177.6 232 50.0
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 2.4e-42 176.8 254 49.2
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 2.4e-42 176.8 249 48.6
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 3.1e-42 176.4 232 50.4
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 1.5e-41 174.1 256 48.0
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 2.6e-41 173.3 214 52.8
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 3.4e-41 172.9 247 49.8
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 5.8e-41 172.2 231 51.5
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 7.6e-41 171.8 234 49.6
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 1.0e-40 171.4 221 51.1
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 1.0e-40 171.4 221 51.1
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.3e-40 171.0 223 48.0
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 2.2e-40 170.2 301 42.5
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 2.2e-40 170.2 222 50.5
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 3.8e-40 169.5 232 48.7
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 6.5e-40 168.7 160 60.6
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 6.5e-40 168.7 239 50.6
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 6.5e-40 168.7 252 47.2
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 8.4e-40 168.3 246 48.4
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 1.1e-39 167.9 232 48.7
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 1.4e-39 167.5 246 48.0
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.4e-39 167.5 215 50.7
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 1.9e-39 167.2 290 41.0
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 2.5e-39 166.8 236 48.7
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 3.2e-39 166.4 228 49.1
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 9.3e-39 164.9 229 46.7
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.2e-38 164.5 174 56.9
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 2.1e-38 163.7 276 42.4
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 7.9e-38 161.8 224 46.4
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.0e-37 161.4 186 53.8
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 3.0e-37 159.8 252 44.8
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 3.0e-37 159.8 228 48.2
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 5.1e-37 159.1 198 53.5
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 6.7e-37 158.7 193 51.8
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 6.7e-37 158.7 205 50.2
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 8.7e-37 158.3 205 50.7
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 8.7e-37 158.3 283 42.4
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 1.9e-36 157.1 205 50.2
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 1.9e-36 157.1 214 49.5
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 1.9e-36 157.1 194 51.5
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 1.9e-36 157.1 214 49.5
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.9e-36 157.1 266 43.6
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 3.3e-36 156.4 209 48.8
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 3.3e-36 156.4 187 51.9
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 5.7e-36 155.6 218 50.0
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 7.4e-36 155.2 205 49.8
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 7.4e-36 155.2 205 49.8
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 7.4e-36 155.2 217 50.2
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 1.3e-35 154.5 210 48.6
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.3e-35 154.5 273 42.9
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 2.1e-35 153.7 189 51.3
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 2.1e-35 153.7 282 40.8
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 3.7e-35 152.9 189 50.8
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 6.3e-35 152.1 229 47.6
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.1e-34 151.4 229 45.4
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 1.8e-34 150.6 208 47.1
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 3.1e-34 149.8 240 45.8
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 5.3e-34 149.1 215 48.4
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 5.3e-34 149.1 240 45.8
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 6.9e-34 148.7 219 47.9
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.6e-33 146.7 201 47.8
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 1.3e-32 144.4 229 44.5
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 3.8e-32 142.9 204 48.5
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 1.9e-31 140.6 334 35.0
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.9e-31 140.6 228 44.7
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 5.5e-31 139.0 281 39.5
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 2.1e-30 137.1 175 53.1
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 2.7e-30 136.7 166 51.8
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 6.1e-30 135.6 219 42.9
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 6.7e-29 132.1 187 47.6
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 8.7e-29 131.7 202 48.0
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 8.7e-29 131.7 127 59.8
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 1.9e-28 130.6 211 43.6
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 1.6e-27 127.5 201 45.8
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 6.3e-27 125.6 137 55.5
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 8.2e-27 125.2 201 42.8
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 1.4e-26 124.4 109 64.2
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.4e-26 124.4 111 60.4
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 3.1e-26 123.2 133 54.1
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 4.5e-25 119.4 130 56.2
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.0e-24 118.2 193 45.6
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 3.8e-24 116.3 191 46.1
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 3.6e-22 109.8 175 44.6
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 1.0e-21 108.2 134 47.8
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 1.0e-21 108.2 116 57.8
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 2.0e-20 104.0 131 52.7
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 4.3e-20 102.8 88 65.9
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.2e-19 100.5 120 53.3
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 9.1e-18 95.1 157 42.0
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.4e-15 87.8 137 43.8
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.5e-15 87.0 100 53.0
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 7.2e-15 85.5 114 44.7
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 7.9e-14 82.0 102 47.1
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.0e-13 81.6 61 72.1
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 8.8e-13 78.6 128 40.6
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 4.4e-12 76.3 135 40.7
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 7.4e-12 75.5 58 70.7
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 9.7e-12 75.1 150 32.7
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.3e-11 74.7 115 47.0
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 6.3e-11 72.4 103 39.8
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.0e-09 67.4 106 50.0
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.6e-09 67.0 49 73.5
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.3e-08 64.7 46 76.1
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.9e-07 60.8 79 46.8


User provided reference genes

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