Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16509_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 1.9e-86 322.4 155 100.0
Medtr3g086830 Medicago truncatula HOM05D008176 ORTHO05D004477 8.3e-58 227.3 156 75.0
TPR.G16006 Trifolium pratense HOM05D008176 ORTHO05D004477 5.6e-54 214.5 156 71.8
Psat5g090880 Pisum sativum HOM05D008176 ORTHO05D004477 2.8e-45 185.7 157 65.0
Glyma.11G242100 Glycine max HOM05D008176 ORTHO05D004477 1.5e-35 153.3 146 63.7
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 1.1e-33 147.1 156 59.0
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 1.9e-33 146.4 151 57.6
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 7.1e-33 144.4 145 61.4
Lalb_Chr11g0075471 Lupinus albus HOM05D008176 ORTHO05D004477 1.1e-30 137.1 146 54.1
Glyma.05G175800 Glycine max HOM05D008176 ORTHO05D004477 5.7e-22 108.2 148 45.9
Glyma.08G133100 Glycine max HOM05D008176 ORTHO05D004477 1.6e-21 106.7 148 45.9
Medtr8g089920 Medicago truncatula HOM05D008176 ORTHO05D004477 2.1e-21 106.3 154 46.1
Psat7g056440 Pisum sativum HOM05D008176 ORTHO05D004477 6.2e-21 104.8 155 45.2
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 2.4e-20 102.8 153 44.4
Lj4g0008028 Lotus japonicus HOM05D008176 ORTHO05D004477 4.0e-20 102.1 150 44.0
Phvul.002G260800 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 1.2e-19 100.5 148 45.3
VMungo0251G0397 Vigna mungo HOM05D008176 ORTHO05D004477 8.4e-18 94.4 142 45.8
TPR.G6203 Trifolium pratense HOM05D008176 ORTHO05D004477 1.2e-16 90.5 155 41.3
Lalb_Chr12g0203981 Lupinus albus HOM05D008176 ORTHO05D004477 1.8e-15 86.7 146 44.5
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 8.2e-13 77.8 138 39.1
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 4.1e-12 75.5 142 40.8
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 9.0e-12 74.3 139 39.6
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 3.4e-11 72.4 135 40.7
Dinv13234 Davidia involucrata HOM05D008176 ORTHO05D004477 4.5e-11 72.0 136 38.2
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 2.2e-10 69.7 136 36.8
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 8.5e-10 67.8 152 34.2
Potri.005G072000 Populus trichocarpa HOM05D008176 ORTHO05D004477 8.5e-10 67.8 139 38.1
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.9e-09 66.6 149 32.9
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.9e-09 66.6 149 32.9
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 7.2e-09 64.7 138 34.8
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 9.4e-09 64.3 141 36.9
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 1.6e-08 63.5 126 38.9
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 1.6e-08 63.5 138 36.2
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 1.6e-08 63.5 145 33.1
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 2.1e-08 63.2 141 36.2
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.1e-08 63.2 145 33.1
Sabra07G0080300 Salix brachista HOM05D008176 ORTHO05D004477 6.1e-08 61.6 140 39.3
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 7.9e-08 61.2 144 33.3
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 3.9e-07 58.9 148 32.4
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 3.9e-07 58.9 148 34.5
Potri.007G097000 Populus trichocarpa HOM05D008176 ORTHO05D004477 3.9e-07 58.9 134 35.1
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 3.9e-07 58.9 134 35.8
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 3.9e-07 58.9 150 35.3
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 3.9e-07 58.9 141 32.6
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 6.7e-07 58.2 136 35.3
Gohir.D11G218800 Gossypium hirsutum HOM05D008176 ORTHO05D004477 8.8e-07 57.8 149 32.2
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 8.8e-07 57.8 140 32.9
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 1.1e-06 57.4 136 34.6
Cfa002600 Carpinus fangiana HOM05D008176 ORTHO05D004477 2.0e-06 56.6 128 34.4
SGA_v2.0_scaffold108G30894 Striga asiatica HOM05D008176 ORTHO05D004477 2.0e-06 56.6 137 37.2
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 2.5e-06 56.2 141 37.6
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.5e-06 56.2 140 34.3
Gohir.A11G204400 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.5e-06 56.2 148 31.8
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.5e-06 56.2 151 34.4
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.5e-06 56.2 141 34.0
Gorai.007G235100 Gossypium raimondii HOM05D008176 ORTHO05D004477 3.3e-06 55.8 148 31.8
Lalb_Chr10g0102531 Lupinus albus HOM05D008046 ORTHO05D004477 3.3e-06 55.8 145 31.7
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 3.3e-06 55.8 145 33.1
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 4.3e-06 55.5 140 34.3
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 4.3e-06 55.5 136 33.1
Manes.13G096700 Manihot esculenta HOM05D008176 ORTHO05D004477 7.4e-06 54.7 130 32.3
FAN26G3011 Fragaria x ananassa HOM05D013332 ORTHO05D004477 9.7e-06 54.3 160 33.8
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 9.7e-06 54.3 146 33.6


User provided reference genes

Program Settings