Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 2517.3 1275 100.0
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 2236.5 1309 86.9
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 2170.6 1283 86.4
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1995.7 1308 78.3
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1974.9 1307 77.7
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1897.5 1310 75.0
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1855.5 1309 73.9
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1789.2 1311 70.1
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1756.1 1302 69.6
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1729.1 1328 67.7
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1671.8 1310 67.2
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 0.0e+00 1607.0 1125 74.4
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1413.7 1305 56.7
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1409.0 1286 57.5
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1401.3 1286 56.8
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1399.0 1313 56.0
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1396.3 1425 52.7
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1366.7 1286 55.8
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1366.7 1313 54.3
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1364.0 1315 54.9
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1342.4 1286 54.8
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1341.6 1290 55.3
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1338.9 1315 54.5
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1333.5 1284 55.3
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1297.0 1290 52.7
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1282.7 1291 53.6
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1275.8 1314 52.7
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1267.7 1314 51.9
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1260.0 1302 52.9
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1255.4 1273 51.2
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1252.7 1285 51.0
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1237.6 1276 52.6
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1236.1 1285 50.5
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1232.6 1292 49.8
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1226.8 1156 56.0
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 0.0e+00 1197.6 1303 50.0
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 0.0e+00 1190.6 1327 49.8
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 0.0e+00 1189.1 1286 50.4
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 0.0e+00 1180.6 1316 49.5
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1171.4 982 65.1
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1170.6 1302 50.2
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1170.2 1301 49.3
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 0.0e+00 1159.1 1332 48.9
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 0.0e+00 1158.7 1282 48.6
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 0.0e+00 1154.8 1293 48.2
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 0.0e+00 1149.4 1289 47.7
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 0.0e+00 1140.9 1291 47.5
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1140.9 1297 48.2
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 0.0e+00 1139.8 1290 48.6
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 1136.7 1303 48.0
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 0.0e+00 1134.4 1286 48.1
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 0.0e+00 1134.0 1159 52.1
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 0.0e+00 1130.2 1289 47.2
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 0.0e+00 1121.7 1145 51.5
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 0.0e+00 1118.6 1288 47.4
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 0.0e+00 1118.6 1281 47.7
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 0.0e+00 1117.8 1159 51.7
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 0.0e+00 1110.5 1289 46.8
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 0.0e+00 1108.2 1063 54.4
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 0.0e+00 1106.3 1285 47.2
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1105.5 1293 46.7
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1101.7 1292 46.5
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 0.0e+00 1100.9 1286 46.8
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1100.1 1292 46.4
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 0.0e+00 1100.1 1292 46.4
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1091.6 1292 46.3
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 0.0e+00 1086.2 1314 46.7
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 2.8e-308 1062.4 1182 49.8
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 1.8e-307 1059.7 1295 45.9
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 8.9e-307 1057.4 1293 44.2
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 1.7e-305 1053.1 1330 44.5
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 3.0e-302 1042.3 1302 45.1
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 1.5e-301 1040.0 1295 45.2
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 3.8e-297 1025.4 1128 48.9
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 2.1e-295 1019.6 1045 52.1
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.0e-294 1017.3 1294 45.2
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 7.3e-293 1011.1 1153 48.0
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 1.5e-290 1003.4 918 56.8
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 1.5e-282 976.9 1258 43.2
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 7.6e-282 974.5 1281 43.1
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 1.9e-277 959.9 1260 44.2
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 7.4e-277 958.0 1265 43.6
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 3.3e-261 906.0 1216 42.9
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 8.2e-260 901.4 1243 42.5
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 1.9e-256 890.2 590 79.3
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 5.3e-243 845.5 872 51.5
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 2.3e-238 830.1 995 47.6
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 1.3e-236 824.3 1209 41.0
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 6.3e-236 822.0 1118 42.7
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 5.3e-227 792.3 1163 41.4
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 6.5e-225 785.4 762 53.9
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 1.8e-222 777.3 1058 42.7
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 1.7e-204 717.6 1271 35.2
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 8.6e-201 705.3 1023 40.1
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 4.4e-197 693.0 494 73.7
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 1.2e-186 658.3 802 44.5
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 2.1e-183 647.5 1032 38.0
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 2.8e-183 647.1 774 47.5
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 6.2e-167 592.8 651 50.1
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 5.8e-165 586.3 397 77.3
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 2.5e-155 554.3 721 44.8
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 4.3e-152 543.5 462 60.2
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 2.9e-148 530.8 497 56.7
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 5.3e-142 510.0 647 43.7
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 6.9e-142 509.6 657 43.5
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 4.1e-118 430.6 403 58.8
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 3.5e-101 374.4 1283 25.4
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 5.9e-101 373.6 474 43.9
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 1.9e-86 325.5 354 45.8
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 3.2e-86 324.7 184 88.6
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 1.2e-85 322.8 603 36.2
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 3.0e-84 318.2 1286 24.3
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.3e-76 292.7 390 41.0
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 8.1e-58 230.3 372 39.5
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 2.9e-55 221.9 290 40.7
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 1.4e-46 193.0 165 59.4
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 1.8e-41 176.0 156 62.8
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 4.8e-34 151.4 126 57.9
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 1.4e-33 149.8 113 70.8
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 2.4e-33 149.1 110 68.2
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 1.7e-31 142.9 127 53.5
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 5.5e-30 137.9 116 61.2
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 1.6e-29 136.3 128 55.5
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 3.6e-29 135.2 136 49.3
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 1.8e-25 122.9 109 56.0
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 8.8e-20 104.0 121 43.0
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 4.4e-19 101.7 149 30.2
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 8.2e-18 97.4 117 46.2
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 2.0e-11 76.3 65 56.9
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 2.0e-11 76.3 59 64.4


User provided reference genes

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