Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 2.1e-106 389.0 200 100.0
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 2.2e-95 352.4 201 91.0
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 2.9e-95 352.1 207 87.9
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.8e-92 342.8 201 88.6
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.8e-92 342.8 201 88.6
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 6.7e-92 340.9 201 88.1
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 1.1e-91 340.1 201 87.6
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.9e-91 339.3 200 86.0
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 2.8e-90 335.5 200 86.0
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 1.4e-89 333.2 202 87.6
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 5.9e-88 327.8 200 86.0
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 9.1e-81 303.9 203 78.3
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 1.5e-80 303.1 202 77.2
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 9.4e-78 293.9 203 76.8
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.2e-77 293.5 203 75.4
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 2.1e-77 292.7 202 74.3
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.4e-76 290.0 200 74.5
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.3e-76 289.3 202 75.2
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 3.9e-76 288.5 202 74.3
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 8.8e-76 287.3 204 72.5
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 1.1e-75 287.0 201 74.6
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 4.4e-75 285.0 204 72.1
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 1.3e-74 283.5 202 73.3
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 1.3e-74 283.5 206 71.8
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.7e-74 283.1 202 69.8
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 6.3e-74 281.2 201 73.6
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 5.3e-73 278.1 204 73.0
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.5e-72 276.6 200 72.0
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 2.0e-72 276.2 203 71.4
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.0e-72 276.2 186 76.3
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 2.0e-72 276.2 203 70.9
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 4.5e-72 275.0 203 72.9
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 5.9e-72 274.6 195 72.3
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 2.9e-71 272.3 203 72.4
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 3.8e-71 271.9 205 70.2
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 6.5e-71 271.2 205 70.2
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 8.5e-71 270.8 206 70.9
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 8.5e-71 270.8 220 66.8
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.9e-70 269.6 202 69.8
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 3.2e-70 268.9 203 69.5
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 4.2e-70 268.5 201 70.6
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 4.2e-70 268.5 204 69.6
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 5.5e-70 268.1 204 69.6
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 1.2e-69 266.9 204 69.1
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 2.1e-69 266.2 151 89.4
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 2.1e-69 266.2 202 68.3
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 3.6e-69 265.4 200 69.5
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 3.6e-69 265.4 209 68.9
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 6.1e-69 264.6 202 68.8
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.0e-68 263.8 178 75.3
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 3.9e-68 261.9 176 77.3
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 6.7e-68 261.2 207 69.1
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 1.1e-67 260.4 202 68.3
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 2.0e-67 259.6 153 85.6
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 9.7e-67 257.3 179 75.4
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 9.7e-67 257.3 179 75.4
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 1.7e-66 256.5 172 75.0
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.8e-66 255.8 204 67.2
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 2.8e-66 255.8 189 70.9
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.7e-66 255.4 236 60.6
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 6.3e-66 254.6 200 67.0
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.1e-65 253.8 210 64.8
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 9.1e-65 250.8 248 57.7
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 1.6e-64 250.0 146 84.9
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.6e-64 249.2 161 76.4
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 2.6e-64 249.2 201 66.2
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 3.5e-64 248.8 169 75.7
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 3.5e-64 248.8 196 66.3
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 7.7e-64 247.7 206 65.5
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 7.7e-64 247.7 171 74.9
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 7.7e-64 247.7 171 74.9
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.3e-63 246.9 149 79.9
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.7e-63 246.5 210 62.9
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 3.8e-63 245.4 205 65.9
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 5.0e-63 245.0 149 78.5
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 6.5e-63 244.6 209 65.1
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 8.5e-63 244.2 149 79.9
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 8.5e-63 244.2 175 72.0
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.5e-62 243.4 208 66.8
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.9e-62 243.0 149 81.9
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 4.2e-62 241.9 212 61.8
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 5.5e-62 241.5 149 81.2
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 2.1e-61 239.6 149 76.5
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 2.1e-61 239.6 149 76.5
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.6e-61 238.8 149 77.9
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 1.4e-60 236.9 182 69.2
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.3e-60 236.1 149 77.2
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 5.2e-60 235.0 204 64.2
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 8.8e-60 234.2 212 61.3
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 1.2e-59 233.8 186 66.1
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 1.2e-59 233.8 201 63.2
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 2.6e-59 232.6 160 75.6
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 2.6e-59 232.6 147 78.2
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 3.3e-59 232.3 185 64.9
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 7.5e-59 231.1 187 65.2
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 9.7e-59 230.7 144 79.2
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.3e-58 230.3 149 75.2
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 2.2e-58 229.6 159 72.3
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 2.2e-58 229.6 211 60.7
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 2.8e-58 229.2 160 71.9
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 2.8e-58 229.2 155 72.9
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 4.8e-58 228.4 147 76.2
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 6.3e-58 228.0 183 65.0
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 1.8e-57 226.5 149 73.8
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 1.8e-57 226.5 149 72.5
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 1.8e-57 226.5 149 71.8
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 2.4e-57 226.1 149 75.8
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 3.1e-57 225.7 149 74.5
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 3.1e-57 225.7 149 77.2
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.1e-57 225.3 152 72.4
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 7.0e-57 224.6 202 59.9
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.2e-56 223.8 202 65.3
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 1.6e-56 223.4 201 65.2
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 2.0e-56 223.0 201 64.7
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 4.5e-56 221.9 201 60.2
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.0e-55 220.7 202 64.4
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.3e-55 220.3 241 54.8
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 1.3e-55 220.3 202 59.9
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.7e-55 219.9 202 60.9
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 5.0e-55 218.4 154 68.8
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 2.7e-53 212.6 225 56.4
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 2.7e-53 212.6 218 60.6
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 2.7e-53 212.6 218 60.6
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 6.1e-53 211.5 176 63.1
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.3e-52 209.5 201 58.7
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 3.0e-52 209.1 176 63.6
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 4.0e-52 208.8 169 61.5
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 4.0e-52 208.8 148 71.6
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 6.8e-52 208.0 167 65.3
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 6.8e-52 208.0 170 64.1
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.2e-51 207.2 192 61.5
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 3.4e-51 205.7 216 53.2
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 9.8e-51 204.1 218 58.7
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 6.3e-50 201.4 124 76.6
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.3e-47 193.7 124 75.8
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.1e-46 190.7 147 68.0
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 1.9e-46 189.9 193 52.8
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.5e-46 189.5 158 62.0
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 3.3e-46 189.1 158 65.2
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 8.9e-44 181.0 149 63.1
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 8.9e-44 181.0 186 55.4
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 2.4e-41 172.9 106 77.4
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 3.1e-41 172.6 144 63.9
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 1.2e-40 170.6 161 57.8
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 5.9e-40 168.3 206 46.6
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.3e-39 167.2 109 75.2
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.1e-38 164.1 150 55.3
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 2.1e-37 159.8 115 69.6
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 5.2e-36 155.2 83 92.8
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 2.2e-34 149.8 93 79.6
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 3.7e-34 149.1 90 81.1
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 1.1e-30 137.5 135 57.0
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 5.2e-28 128.6 111 63.1
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 1.2e-27 127.5 193 46.6
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 5.6e-22 108.6 97 56.7
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 7.3e-22 108.2 155 37.4
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 2.6e-19 99.8 170 34.1
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 1.3e-18 97.4 82 63.4
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 3.1e-12 76.3 81 54.3
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 1.3e-10 70.9 184 31.0
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.7e-10 70.5 68 54.4
Haze_22969 Corylus avellana HOM05D000479 ORTHO05D044822 1.6e-08 63.9 102 41.2
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 6.0e-08 62.0 64 48.4
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 3.3e-06 56.2 39 64.1


User provided reference genes

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