Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 0.0e+00 2228.0 1153 100.0
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 0.0e+00 2228.0 1153 100.0
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 0.0e+00 1448.3 1501 57.4
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 0.0e+00 1135.9 1249 56.4
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 6.9e-274 948.0 1228 49.3
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 5.3e-266 921.8 1243 47.9
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 6.8e-229 798.5 1194 46.4
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 5.0e-216 755.7 1158 45.2
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.5e-199 701.0 1258 39.7
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 4.9e-195 686.0 971 45.6
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 7.3e-175 619.0 1420 35.4
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 5.4e-170 602.8 1387 36.0
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 4.3e-167 593.2 1402 35.4
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 1.6e-158 564.7 1434 33.6
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 1.6e-158 564.7 985 41.5
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.6e-156 557.4 838 43.3
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 5.8e-148 529.6 1392 33.4
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 5.5e-146 523.1 1432 32.9
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 3.3e-143 513.8 1391 33.2
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 9.7e-143 512.3 1391 32.7
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 8.2e-142 509.2 1389 33.2
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 3.3e-135 487.3 1299 33.8
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 2.4e-133 481.1 1339 33.5
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 9.1e-133 479.2 1337 31.8
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 2.0e-132 478.0 1354 32.9
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.9e-131 474.2 1358 32.6
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 2.9e-131 474.2 1363 31.3
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 6.5e-131 473.0 1371 31.9
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.1e-130 472.2 1337 33.3
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 1.2e-129 468.8 1419 31.0
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 4.7e-129 466.8 1365 31.1
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 6.1e-129 466.5 1350 32.6
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 1.8e-128 464.9 1273 32.1
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 3.3e-127 460.7 1363 31.2
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 1.3e-126 458.8 1166 33.5
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 4.8e-126 456.8 1166 33.4
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 6.3e-126 456.4 1425 29.8
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.1e-125 455.7 1326 31.7
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 1.8e-125 454.9 1068 34.8
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 4.5e-124 450.3 1159 33.6
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 5.5e-122 443.4 1324 31.3
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 5.5e-122 443.4 1377 31.2
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 8.0e-121 439.5 1347 32.5
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 1.8e-120 438.3 1360 31.8
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 3.1e-117 427.6 1392 29.6
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 2.0e-116 424.9 1306 31.2
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 7.7e-116 422.9 1351 29.9
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 1.7e-115 421.8 466 53.4
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 3.6e-113 414.1 1471 29.8
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 2.1e-105 388.3 1277 31.9
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 4.1e-101 374.0 1286 30.0
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 1.2e-100 372.5 1343 29.5
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 6.6e-99 366.7 1224 30.3
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 8.6e-99 366.3 1237 30.5
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 2.5e-98 364.8 1218 29.6
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 4.3e-98 364.0 919 32.3
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 2.1e-97 361.7 1344 28.6
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 6.8e-96 356.7 1353 29.0
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 1.2e-95 355.9 1199 30.7
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 2.6e-95 354.8 1321 29.7
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 2.9e-94 351.3 1288 30.4
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 2.9e-94 351.3 1183 30.1
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 3.7e-94 350.9 289 69.9
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 1.4e-93 349.0 1187 30.3
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 1.4e-93 349.0 1214 31.1
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 2.7e-92 344.7 1195 30.0
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 7.8e-92 343.2 1198 28.8
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 7.8e-92 343.2 1199 29.1
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 7.8e-92 343.2 1198 28.8
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 7.8e-92 343.2 1354 28.1
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 4.3e-90 337.4 1354 28.2
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.6e-89 334.3 904 32.3
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 4.7e-89 334.0 1350 28.0
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 3.1e-88 331.3 879 32.3
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 9.8e-87 326.2 1177 28.7
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 4.1e-85 320.9 1336 28.1
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 6.0e-84 317.0 1340 27.3
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 1.0e-83 316.2 1202 29.3
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 8.1e-81 306.6 1320 27.4
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 1.4e-80 305.8 345 49.9
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 1.2e-79 302.8 1327 27.2
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 7.5e-79 300.1 1162 27.0
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 2.1e-76 292.0 1257 28.1
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 1.7e-75 288.9 1094 29.3
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 1.9e-74 285.4 1340 27.8
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 1.2e-73 282.7 1270 27.4
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 1.4e-72 279.3 525 39.0
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 5.8e-71 273.9 1165 27.8
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 1.7e-70 272.3 1317 26.4
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 3.7e-70 271.2 464 36.6
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 6.4e-70 270.4 462 37.2
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 8.6e-67 260.0 155 82.6
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 1.1e-66 259.6 1382 24.8
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 4.3e-66 257.7 1244 27.0
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 1.2e-65 256.1 1269 26.1
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 2.8e-65 255.0 1373 25.0
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.5e-63 249.2 1106 27.3
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 2.4e-61 241.9 411 39.4
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 1.0e-59 236.5 1429 25.0
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 1.7e-59 235.7 1181 25.7
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 9.6e-58 229.9 398 36.9
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 1.1e-56 226.5 400 36.8
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 3.2e-53 214.9 279 44.1
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 3.0e-51 208.4 273 45.4
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 6.6e-51 207.2 1268 25.1
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 3.3e-50 204.9 300 44.7
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 3.3e-50 204.9 310 39.7
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 1.3e-49 203.0 1193 23.5
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.4e-48 199.5 782 28.0
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 3.1e-48 198.4 1160 24.4
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 2.0e-47 195.7 1329 25.6
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 8.4e-46 190.3 527 30.4
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 4.6e-44 184.5 298 44.6
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 6.0e-36 157.5 137 62.0
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 3.0e-35 155.2 282 41.8
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 1.2e-23 116.7 130 50.8
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 4.5e-23 114.8 124 47.6
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 2.2e-22 112.5 146 38.4
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 2.5e-21 109.0 261 37.9
Glyma.07G011650 Glycine max HOM05D005171 ORTHO05D006343 3.2e-21 108.6 87 62.1
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 2.4e-16 92.4 98 49.0
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 6.9e-16 90.9 117 45.3
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 6.9e-16 90.9 117 45.3
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 3.8e-14 85.1 357 27.7
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 2.5e-13 82.4 250 31.2
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 1.0e-11 77.0 116 38.8
arahy.Tifrunner.gnm1.ann1.PMM024 Arachis hypogaea HOM05D005171 ORTHO05D006343 3.0e-11 75.5 147 36.7
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.3e-10 72.0 107 42.1
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 4.8e-09 68.2 80 46.2
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 6.3e-09 67.8 91 46.2
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 7.0e-08 64.3 107 38.3
SEGI_11604 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 9.1e-08 63.9 103 35.9
SEGI_34464 Sequoiadendron giganteum HOM05D005171 ORTHO05D030606 1.2e-07 63.5 150 26.0
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 5.9e-07 61.2 67 47.8
Actinidia12355 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.0e-06 60.5 334 26.9
A03p44260 Brassica napus HOM05D005171 ORTHO05D041371 6.5e-06 57.8 84 36.9
BraA03t13556Z Brassica rapa HOM05D005171 ORTHO05D041371 6.5e-06 57.8 84 36.9


User provided reference genes

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