Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 1.9e-280 968.8 582 100.0
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 4.4e-184 648.7 584 72.3
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 3.7e-167 592.4 594 69.0
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 8.0e-162 574.7 586 66.6
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 1.7e-124 450.7 587 56.0
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 1.1e-123 448.0 523 52.0
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 3.1e-121 439.9 585 55.9
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 5.8e-120 435.6 577 57.9
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 1.6e-117 427.6 461 64.0
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 1.7e-116 424.1 502 59.8
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 2.3e-116 423.7 558 56.6
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 2.4e-113 413.7 466 60.5
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 1.9e-110 404.1 584 54.8
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 7.1e-110 402.1 448 60.5
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 1.3e-108 397.9 545 52.7
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 3.0e-108 396.7 448 59.8
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 5.1e-108 396.0 592 51.9
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 7.4e-107 392.1 469 58.6
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 1.1e-105 388.3 525 54.5
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 2.4e-105 387.1 586 50.5
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 4.0e-105 386.3 461 59.0
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 1.9e-102 377.5 426 59.2
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 3.2e-102 376.7 430 56.5
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 5.5e-102 375.9 458 59.6
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 3.5e-101 373.2 584 50.3
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 6.0e-101 372.5 450 56.9
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 1.1e-99 368.2 467 58.2
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 1.9e-99 367.5 450 56.7
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 1.9e-99 367.5 457 58.2
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 5.6e-99 365.9 582 50.7
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 7.4e-99 365.5 580 49.7
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 8.2e-98 362.1 449 58.6
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 4.0e-97 359.8 587 49.4
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 5.3e-97 359.4 593 48.7
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 5.3e-97 359.4 581 49.9
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 5.3e-97 359.4 547 50.5
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 6.9e-97 359.0 586 50.2
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 1.2e-96 358.2 582 49.7
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 3.4e-96 356.7 595 49.1
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 7.6e-96 355.5 547 50.6
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 1.0e-95 355.1 579 51.8
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 1.3e-95 354.8 457 56.0
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 3.8e-95 353.2 605 50.2
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 3.8e-95 353.2 605 50.2
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 4.9e-95 352.8 521 51.8
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 2.5e-94 350.5 609 46.0
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 4.2e-94 349.7 530 51.7
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 4.2e-94 349.7 601 46.8
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 5.5e-94 349.4 533 50.7
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 7.1e-94 349.0 461 54.0
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 3.5e-93 346.7 473 54.8
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 3.5e-93 346.7 605 48.6
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 5.1e-92 342.8 467 55.0
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 1.1e-91 341.7 474 40.7
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 2.5e-91 340.5 347 51.0
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 4.3e-91 339.7 590 46.6
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 9.7e-91 338.6 460 57.0
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.4e-89 334.7 468 54.1
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.4e-89 334.0 562 48.2
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 4.1e-89 333.2 462 53.2
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 1.7e-87 327.8 583 47.0
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 1.9e-86 324.3 579 47.2
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 4.6e-85 319.7 474 52.7
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 2.3e-84 317.4 493 52.3
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 3.0e-84 317.0 577 46.3
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 3.0e-84 317.0 449 52.8
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 5.1e-84 316.2 610 45.6
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 4.3e-83 313.2 300 53.0
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 5.7e-83 312.8 474 50.8
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 1.1e-81 308.5 477 50.3
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 1.8e-81 307.8 469 50.7
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 3.1e-81 307.0 486 51.9
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 4.5e-80 303.1 415 40.2
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 5.9e-80 302.8 616 43.7
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 1.7e-79 301.2 529 47.8
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 2.2e-79 300.8 415 40.0
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 5.0e-79 299.7 447 54.1
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 1.6e-77 294.7 619 42.0
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 7.9e-77 292.4 466 47.4
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 3.0e-76 290.4 450 50.9
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 8.8e-76 288.9 447 39.1
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 1.7e-74 284.6 567 43.7
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 6.3e-74 282.7 602 44.0
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 2.4e-73 280.8 475 49.9
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 4.1e-73 280.0 601 41.9
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 7.7e-72 275.8 389 42.4
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 4.2e-70 270.0 466 49.1
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 6.1e-69 266.2 461 48.8
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 3.9e-68 263.5 564 43.3
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 1.5e-67 261.5 567 42.5
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 9.7e-67 258.8 467 48.2
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 7.0e-65 252.7 465 46.7
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 7.0e-65 252.7 607 43.3
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 1.6e-64 251.5 465 47.1
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 5.9e-64 249.6 460 45.0
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 6.5e-63 246.1 461 46.9
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 3.2e-62 243.8 460 46.5
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 4.0e-60 236.9 296 43.9
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 5.2e-60 236.5 574 40.8
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 4.4e-59 233.4 574 40.6
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 3.1e-57 227.3 490 42.7
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 1.3e-55 221.9 432 46.1
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 6.5e-55 219.5 577 40.6
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 6.5e-55 219.5 577 40.6
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 8.5e-55 219.2 562 32.4
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 1.1e-54 218.8 427 34.9
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 2.1e-53 214.5 403 34.2
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 3.0e-52 210.7 603 38.8
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 5.4e-49 199.9 259 42.5
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 1.3e-47 195.3 327 38.5
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 1.6e-45 188.3 321 39.6
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 6.1e-45 186.4 324 38.6
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 6.1e-45 186.4 324 38.6
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.2e-43 182.2 311 39.9
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 2.2e-42 177.9 297 41.1
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 3.5e-40 170.6 315 38.1
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 3.6e-37 160.6 293 32.4
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.3e-34 152.1 355 32.4
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 1.6e-32 145.2 314 33.8
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.7e-31 141.7 367 30.5
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 4.3e-30 137.1 168 45.8
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 4.1e-25 120.6 74 78.4
Medtr3g108743 Medicago truncatula HOM05D030372 ORTHO05D025854 1.3e-23 115.5 79 74.7
Ca_09603_v3 Cicer arietinum L. HOM05D004670 ORTHO05D014137 4.3e-22 110.5 174 40.8
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 1.1e-20 105.9 202 38.6
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 3.4e-19 100.9 70 70.0
Medtr1g102600 Medicago truncatula HOM05D004670 ORTHO05D266903 7.1e-17 93.2 134 37.3
AUR62044649 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.0e-15 87.8 64 68.8
VMungo1215G2433 Vigna mungo HOM05D004670 ORTHO05D014137 8.6e-15 86.3 70 65.7
Medtr8g080260 Medicago truncatula HOM05D004670 ORTHO05D014137 1.9e-14 85.1 136 41.2
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 5.2e-12 77.0 109 40.4
Os01g0897500 Oryza sativa ssp. japonica HOM05D004670 ORTHO05D008020 2.6e-11 74.7 63 58.7
Medtr5g095780 Medicago truncatula HOM05D004670 ORTHO05D008020 1.3e-10 72.4 66 47.0
Oeu039630.1 Olea europaea HOM05D004670 ORTHO05D025854 2.4e-09 68.2 146 53.4
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 5.4e-09 67.0 237 21.9
Peaxi162Scf00301g00516 Petunia axillaris HOM05D030372 ORTHO05D025854 2.7e-08 64.7 229 27.1
Peaxi162Scf00301g00517 Petunia axillaris HOM05D030372 ORTHO05D025854 2.7e-08 64.7 229 27.1
Peaxi162Scf00301g00518 Petunia axillaris HOM05D030372 ORTHO05D025854 2.7e-08 64.7 229 27.1
QL11p014332 Quercus lobata HOM05D004271 ORTHO05D006011 3.5e-08 64.3 216 21.3
Cc11_g04640 Coffea canephora HOM05D007884 ORTHO05D009968 1.7e-07 62.0 352 21.6
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 3.0e-07 61.2 338 20.1
Glyma.18G295400 Glycine max HOM05D008684 ORTHO05D010796 3.9e-07 60.8 205 24.4
HanXRQChr10g0293751 Helianthus annuus HOM05D006218 ORTHO05D007338 3.9e-07 60.8 174 25.9
Sed0026458 Sechium edule HOM05D008684 ORTHO05D010796 3.9e-07 60.8 250 24.0
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 5.1e-07 60.5 204 24.5
Potri.017G033000 Populus trichocarpa HOM05D008684 ORTHO05D010796 5.1e-07 60.5 205 22.9
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 6.6e-07 60.1 198 23.7
Cpa.g.sc15.139 Carica papaya HOM05D004670 ORTHO05D022223 8.7e-07 59.7 168 31.0
Gohir.A06G047500 Gossypium hirsutum HOM05D000424 ORTHO05D009589 1.1e-06 59.3 330 21.2
Lalb_Chr14g0373751 Lupinus albus HOM05D000891 ORTHO05D000761 1.1e-06 59.3 253 21.7
Ca_08075_v3 Cicer arietinum L. HOM05D008684 ORTHO05D010796 1.5e-06 58.9 316 20.6
Thecc.05G003500 Theobroma cacao HOM05D008684 ORTHO05D010796 1.5e-06 58.9 237 22.8
Thhalv10024515m.g Eutrema salsugineum HOM05D005973 ORTHO05D007285 1.9e-06 58.5 177 22.6
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 1.9e-06 58.5 174 24.1
SEGI_27242 Sequoiadendron giganteum HOM05D002986 ORTHO05D007611 1.9e-06 58.5 203 24.1
TAR623G0780 Trochodendron aralioides HOM05D007559 ORTHO05D009642 1.9e-06 58.5 179 21.8
TAR623G1207 Trochodendron aralioides HOM05D007559 ORTHO05D009642 1.9e-06 58.5 179 21.8
TAR623G1276 Trochodendron aralioides HOM05D007559 ORTHO05D009642 1.9e-06 58.5 179 21.8
AL4G35690 Arabidopsis lyrata HOM05D007559 ORTHO05D009642 3.3e-06 57.8 174 21.8
Dinv19018 Davidia involucrata HOM05D002007 ORTHO05D000355 4.3e-06 57.4 346 19.1
MD15G1265700 Malus domestica HOM05D000891 ORTHO05D000761 4.3e-06 57.4 101 29.7
Dinv35437 Davidia involucrata HOM05D007559 ORTHO05D009642 9.6e-06 56.2 179 19.6


User provided reference genes

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