Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 1.2e-291 1005.7 488 100.0
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 1.2e-264 916.0 488 91.2
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 1.6e-256 889.0 488 88.5
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 3.5e-243 844.7 488 84.0
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 5.6e-241 837.4 489 83.2
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 2.0e-235 818.9 485 82.7
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 5.0e-234 814.3 478 82.8
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 1.2e-232 809.7 483 80.7
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 3.9e-226 788.1 481 80.2
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 2.0e-206 722.6 462 78.1
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 4.4e-206 721.5 490 72.0
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.5e-201 705.7 483 73.3
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 3.3e-201 705.3 487 72.1
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 3.3e-201 705.3 486 72.0
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 2.1e-200 702.6 486 72.2
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 1.8e-199 699.5 488 70.3
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 9.0e-199 697.2 481 72.1
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 1.7e-197 693.0 497 71.2
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 4.9e-197 691.4 493 71.0
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 5.4e-196 688.0 493 70.8
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 5.4e-196 688.0 489 71.2
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 1.6e-195 686.4 485 72.6
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 2.7e-195 685.6 479 71.6
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.6e-195 684.9 479 72.7
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 6.0e-195 684.5 481 71.7
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 3.9e-194 681.8 482 71.2
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 1.9e-193 679.5 495 70.7
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 5.6e-193 677.9 498 69.3
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 3.6e-192 675.2 475 72.4
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 6.2e-192 674.5 480 69.8
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.1e-191 673.7 479 71.4
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 1.1e-191 673.7 478 70.5
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 5.3e-191 671.4 476 72.3
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 9.9e-190 667.2 484 69.4
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 1.1e-188 663.7 479 68.3
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 1.4e-188 663.3 492 68.3
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.4e-188 663.3 484 69.2
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 2.4e-188 662.5 483 67.7
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 2.1e-187 659.4 499 67.9
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.1e-185 653.7 485 68.0
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 3.1e-183 645.6 476 68.5
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 9.0e-183 644.0 481 67.6
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 9.0e-183 644.0 482 66.8
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 1.0e-181 640.6 480 67.5
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 1.1e-180 637.1 480 67.1
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 2.5e-180 636.0 481 67.8
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 4.2e-180 635.2 466 68.9
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 4.2e-180 635.2 515 64.3
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 3.5e-179 632.1 478 67.8
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 1.1e-177 627.1 475 65.9
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 1.5e-177 626.7 482 66.0
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 1.5e-177 626.7 482 66.0
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 9.6e-177 624.0 480 65.8
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 1.3e-176 623.6 484 66.3
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 1.6e-176 623.2 475 67.2
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.1e-176 622.9 481 65.9
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 3.7e-176 622.1 479 66.0
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 1.1e-175 620.5 487 65.1
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.1e-175 620.5 468 67.1
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 2.4e-175 619.4 492 63.6
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 4.1e-175 618.6 492 65.2
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 6.9e-175 617.8 483 65.4
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 6.9e-175 617.8 486 66.0
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 9.0e-175 617.5 483 66.3
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 4.5e-174 615.1 449 69.7
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 1.3e-170 603.6 484 65.1
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 1.3e-170 603.6 531 59.9
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 3.9e-170 602.1 479 64.1
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 2.5e-169 599.4 480 64.2
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 4.3e-169 598.6 464 66.2
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 1.1e-167 594.0 493 61.5
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 1.2e-166 590.5 491 62.9
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 3.8e-165 585.5 475 64.4
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 3.8e-165 585.5 494 60.9
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 5.5e-164 581.6 469 63.5
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 3.0e-162 575.9 478 62.3
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 7.4e-161 571.2 481 60.3
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 7.4e-161 571.2 481 63.6
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 1.3e-160 570.5 494 59.7
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 9.1e-159 564.3 483 61.9
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 3.4e-158 562.4 477 62.3
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 3.0e-154 549.3 495 59.8
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 5.1e-154 548.5 479 58.9
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 3.3e-153 545.8 346 79.5
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 1.1e-151 540.8 487 57.9
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 7.0e-151 538.1 552 52.7
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 1.1e-148 530.8 477 58.7
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 9.4e-148 527.7 523 56.8
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.1e-147 526.6 476 61.8
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 4.7e-147 525.4 465 60.0
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 1.8e-146 523.5 481 60.3
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.8e-146 523.5 403 66.0
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 2.8e-144 516.2 408 65.4
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 1.5e-140 503.8 372 68.5
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 1.9e-140 503.4 383 68.4
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 8.0e-139 498.0 383 65.3
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 1.4e-138 497.3 485 54.2
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 1.4e-138 497.3 280 82.5
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 4.0e-138 495.7 521 52.6
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 5.2e-138 495.4 483 57.3
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 2.6e-137 493.0 397 64.7
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 5.0e-133 478.8 457 57.1
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 1.5e-132 477.2 409 61.1
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 9.5e-132 474.6 542 49.6
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 6.1e-131 471.9 449 57.5
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 6.3e-128 461.8 474 52.1
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 1.6e-126 457.2 849 36.7
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.3e-125 454.1 518 49.0
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 2.5e-124 449.9 500 53.8
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 1.2e-123 447.6 266 78.9
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 3.5e-110 402.9 472 49.2
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 1.2e-105 387.9 475 48.6
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 6.0e-94 349.0 432 50.5
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 6.6e-93 345.5 624 37.5
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 4.7e-91 339.3 226 67.7
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 3.8e-88 329.7 344 53.8
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.6e-78 297.7 198 69.2
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 1.3e-77 294.7 480 37.9
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 1.9e-71 274.2 265 50.2
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 1.9e-68 264.2 133 95.5
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 1.4e-63 248.1 132 87.1
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 9.3e-63 245.4 281 43.8
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 3.2e-55 220.3 298 41.6
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.6e-54 218.0 389 40.4
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.1e-52 211.8 326 38.3
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 5.3e-50 203.0 114 82.5
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.6e-41 174.1 102 79.4
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.7e-35 154.8 86 82.6
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 2.7e-25 120.9 82 69.5
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 2.9e-24 117.5 62 82.3
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 3.0e-21 107.5 80 65.0
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 5.0e-16 90.1 66 59.1
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 1.1e-15 89.0 52 84.6
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 4.7e-14 83.6 41 87.8
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 2.0e-12 78.2 58 60.3
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 6.3e-11 73.2 94 44.7
QL04p060164 Quercus lobata HOM05D005440 ORTHO05D007314 8.3e-11 72.8 122 37.7
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 2.4e-10 71.2 72 51.4
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 3.1e-10 70.9 48 66.7
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 9.2e-10 69.3 44 75.0


User provided reference genes

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