Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1976.8 1001 100.0
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1775.0 1006 89.3
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1748.4 1006 88.1
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1733.0 1008 88.3
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1706.0 1005 86.7
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1655.6 1008 83.6
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1595.1 1010 81.4
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1587.4 968 83.9
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1555.0 1086 75.1
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1549.6 1013 78.2
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1538.9 1008 78.0
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1536.9 1012 77.5
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1526.5 1006 76.5
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1521.9 1008 76.1
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1510.0 1012 76.0
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1508.8 1011 75.6
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1508.4 1015 75.2
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1507.7 1008 75.3
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1505.3 1025 74.6
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1502.3 1009 75.1
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1497.3 1014 74.8
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1494.9 1033 73.6
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1488.8 1012 74.7
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1488.0 1033 73.2
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1484.9 1016 75.6
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1484.2 1013 74.8
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1483.8 1011 74.9
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1481.5 1044 72.4
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1481.5 1030 73.4
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1480.3 1017 74.7
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1471.8 1000 74.3
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1470.3 1010 74.5
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1467.2 1017 73.9
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1466.1 1010 74.7
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1463.7 966 77.6
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1462.6 1016 73.5
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1460.7 1018 73.0
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1459.9 1007 74.8
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1458.4 1023 72.8
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1458.0 1011 73.3
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1454.5 1017 73.3
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1453.7 1021 72.4
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1453.0 1018 72.7
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1451.8 1018 72.6
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1450.3 1016 74.0
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1448.0 1008 73.3
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1447.2 1000 75.3
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1445.6 1011 72.5
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1439.1 1008 73.3
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1436.8 1000 75.0
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1432.9 1004 73.0
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1431.8 1016 72.6
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1431.4 1017 71.8
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1429.5 1053 69.8
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1427.5 1013 71.1
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1422.9 1003 71.8
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1421.4 1015 72.0
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1421.4 1016 72.1
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1420.6 1015 72.0
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1419.8 1015 71.8
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1418.7 1015 71.6
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1416.7 1016 71.7
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1416.4 1018 71.4
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1415.2 1007 70.7
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1414.8 1017 70.7
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1414.8 1015 71.6
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1414.4 1015 71.8
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1412.9 1042 70.9
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1412.5 1007 70.6
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1412.1 1020 72.3
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1408.7 1032 70.4
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1405.6 1005 71.3
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1401.3 1025 70.6
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1400.6 1004 70.5
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1399.4 1030 71.5
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1391.7 966 74.0
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1389.0 1014 71.0
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1386.3 932 75.6
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1385.5 1043 67.7
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1385.5 1013 68.8
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1385.2 1027 70.8
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1384.4 1008 69.2
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1379.8 1008 69.6
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1369.8 979 70.5
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1360.9 1039 68.8
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1359.7 1018 68.2
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1355.9 1008 68.0
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1341.6 1141 62.8
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1340.1 1107 64.7
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1339.7 1014 68.9
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1332.8 1015 69.7
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1322.4 1015 66.4
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1320.4 1174 60.7
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1304.3 983 68.3
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1294.6 1006 67.1
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1281.9 1004 66.2
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1279.6 1018 67.1
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1272.3 1014 66.2
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1271.5 1005 66.2
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1263.1 975 67.4
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1263.1 1021 63.8
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1261.9 1022 64.4
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1254.2 1004 65.5
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1243.8 1004 64.1
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1243.0 970 66.8
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1239.9 944 66.9
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1223.4 1044 62.3
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1220.7 1002 63.7
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1212.6 919 68.8
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1194.5 1013 63.1
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1193.3 1006 63.0
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1187.2 1000 60.6
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1184.5 864 71.3
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1164.1 1020 59.4
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1159.1 1015 59.3
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1131.3 981 62.7
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1123.2 900 66.0
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1102.0 862 67.3
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1095.9 929 60.8
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1090.9 812 69.6
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 4.4e-293 1011.5 941 58.6
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 1.3e-276 956.8 641 78.6
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 4.4e-269 931.8 878 57.2
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.7e-268 929.9 780 64.1
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 2.2e-268 929.5 1033 51.0
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 4.9e-268 928.3 1040 50.5
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 2.7e-258 896.0 631 71.9
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 9.0e-254 880.9 627 73.5
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.4e-251 873.6 977 49.4
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.0e-236 824.3 1019 46.0
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.1e-235 820.8 1015 46.3
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 2.6e-229 799.7 618 64.7
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 1.2e-221 774.2 1226 41.1
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 3.3e-216 756.1 868 46.2
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 2.2e-204 716.8 390 91.0
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 2.9e-196 689.9 475 77.1
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 8.0e-194 681.8 439 80.6
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 2.0e-168 597.4 359 82.2
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 1.8e-161 574.3 427 70.7
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 5.1e-148 529.6 554 51.8
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 1.1e-139 501.9 531 52.7
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 8.2e-114 416.0 256 83.6
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 2.5e-110 404.4 276 75.4
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 2.0e-104 384.8 277 75.1
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 3.4e-104 384.0 237 81.0
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 2.7e-101 374.4 205 83.9
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 1.1e-94 352.4 287 70.4
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 1.5e-94 352.1 266 72.6
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 1.8e-84 318.5 238 66.8
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 2.4e-81 308.1 841 29.4
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 9.4e-78 296.2 162 86.4
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 2.6e-75 288.1 223 66.8
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.8e-73 282.0 150 87.3
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 6.4e-50 203.8 132 78.8
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 6.0e-48 197.2 114 78.1
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 3.0e-47 194.9 478 32.0
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 3.9e-47 194.5 218 54.1
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.5e-46 192.6 147 72.1
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 2.5e-46 191.8 129 74.4
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 9.5e-46 189.9 153 64.1
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.7e-40 171.8 90 82.2
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 8.4e-34 150.2 97 82.5
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.7e-31 142.5 88 72.7
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 6.2e-29 134.0 77 77.9
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 1.0e-23 116.7 96 59.4
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 3.3e-22 111.7 80 68.8
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 5.6e-22 110.9 98 59.2
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 5.6e-22 110.9 98 59.2
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 4.8e-21 107.8 80 67.5
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 6.2e-21 107.5 113 53.1
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 1.0e-15 90.1 58 79.3
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 1.3e-13 83.2 103 50.5
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.5e-11 76.3 46 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 3.4e-11 75.1 48 72.9
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 2.2e-10 72.4 65 52.3


User provided reference genes

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