Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 3.4e-92 341.7 174 100.0
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 4.3e-79 298.1 162 93.2
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 4.8e-78 294.7 166 90.4
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 1.7e-75 286.2 164 84.1
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 3.8e-75 285.0 164 86.0
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 4.2e-74 281.6 164 84.1
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 5.5e-74 281.2 164 84.1
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 5.5e-74 281.2 162 86.4
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 2.1e-73 279.3 166 81.9
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 2.1e-73 279.3 164 82.9
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 1.8e-72 276.2 164 82.3
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 3.0e-72 275.4 171 80.7
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 1.9e-71 272.7 164 81.7
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 3.3e-71 271.9 164 79.9
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 7.4e-71 270.8 178 80.9
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 9.7e-71 270.4 164 79.3
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.3e-70 270.0 164 78.7
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 4.8e-70 268.1 164 77.4
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 8.2e-70 267.3 164 78.7
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 1.1e-69 266.9 164 76.8
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 3.1e-69 265.4 164 78.0
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 1.5e-68 263.1 164 75.6
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 1.0e-67 260.4 164 76.8
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.0e-67 260.4 164 74.4
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 2.9e-67 258.8 164 75.6
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 6.5e-67 257.7 164 72.6
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 1.1e-66 256.9 164 75.6
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.5e-66 255.8 164 75.0
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.5e-66 255.8 164 75.0
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 2.5e-66 255.8 164 74.4
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 2.5e-66 255.8 168 72.0
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 2.5e-66 255.8 164 75.0
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 3.2e-66 255.4 164 73.2
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 4.2e-66 255.0 164 73.8
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 7.2e-66 254.2 164 75.0
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 9.3e-66 253.8 164 72.0
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 9.3e-66 253.8 164 72.6
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 1.2e-65 253.4 164 73.8
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 1.2e-65 253.4 164 73.2
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 1.2e-65 253.4 164 75.6
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 2.1e-65 252.7 164 72.6
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 2.1e-65 252.7 162 72.8
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 2.7e-65 252.3 164 72.0
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 2.7e-65 252.3 164 72.0
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 2.7e-65 252.3 168 71.4
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 2.7e-65 252.3 163 73.0
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 3.6e-65 251.9 164 73.8
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 3.6e-65 251.9 164 75.6
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 4.6e-65 251.5 164 73.8
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 4.6e-65 251.5 164 73.2
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 4.6e-65 251.5 164 73.2
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 4.6e-65 251.5 164 73.2
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 6.1e-65 251.1 164 74.4
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 7.9e-65 250.8 164 75.6
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 1.0e-64 250.4 164 71.3
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 1.0e-64 250.4 164 71.3
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 1.3e-64 250.0 164 72.0
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 1.8e-64 249.6 164 73.2
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 2.3e-64 249.2 164 72.0
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 2.3e-64 249.2 164 72.0
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 2.3e-64 249.2 164 72.0
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 3.0e-64 248.8 164 72.6
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 8.7e-64 247.3 164 70.1
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 70.1
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 1.5e-63 246.5 165 70.3
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 1.5e-63 246.5 165 70.3
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.9e-63 246.1 156 73.7
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 3.3e-63 245.4 163 71.2
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 4.3e-63 245.0 164 68.9
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 4.3e-63 245.0 163 70.6
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 5.7e-63 244.6 164 66.5
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 5.7e-63 244.6 164 70.1
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 7.4e-63 244.2 164 70.1
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 1.3e-62 243.4 173 68.2
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 1.3e-62 243.4 164 66.5
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 2.2e-62 242.7 164 72.0
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 2.8e-62 242.3 188 66.5
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 8.2e-62 240.7 164 67.7
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 2.4e-61 239.2 164 68.9
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 2.4e-61 239.2 164 69.5
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 2.4e-61 239.2 164 68.9
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 4.1e-61 238.4 160 70.6
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 4.1e-61 238.4 164 67.7
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 9.1e-61 237.3 164 69.5
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 9.1e-61 237.3 164 68.9
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 9.1e-61 237.3 164 68.9
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 2.0e-60 236.1 191 62.3
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 2.0e-60 236.1 164 68.3
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 2.6e-60 235.7 164 68.3
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 4.5e-60 235.0 185 63.2
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 4.5e-60 235.0 193 61.7
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 5.9e-60 234.6 164 67.7
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 5.9e-60 234.6 164 67.1
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 7.7e-60 234.2 164 70.1
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 5.0e-59 231.5 165 63.6
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 1.1e-58 230.3 161 65.8
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 2.5e-58 229.2 164 65.9
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 3.2e-58 228.8 165 62.4
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 9.4e-58 227.3 164 65.9
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 1.2e-57 226.9 164 65.9
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 1.4e-56 223.4 164 64.0
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 1.4e-56 223.4 171 64.9
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 2.3e-56 222.6 164 65.2
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 3.0e-56 222.2 164 64.6
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 2.0e-55 219.5 164 64.0
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 3.1e-53 212.2 164 63.4
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 1.0e-51 207.2 133 73.7
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 1.4e-48 196.8 221 52.5
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.3e-46 190.3 169 57.4
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 2.4e-45 186.0 164 51.8
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 7.7e-44 181.0 117 78.6
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 6.5e-43 177.9 167 54.5
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 1.5e-42 176.8 170 52.9
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 1.5e-42 176.8 170 52.9
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 2.5e-42 176.0 132 62.1
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 2.3e-40 169.5 164 52.4
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 7.0e-37 157.9 168 45.2
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 4.5e-36 155.2 171 44.4
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 1.7e-35 153.3 159 48.4
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 6.1e-33 144.8 122 53.3
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 5.2e-32 141.7 97 71.1
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 1.5e-31 140.2 81 80.2
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 2.0e-31 139.8 161 47.8
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 2.6e-31 139.4 94 71.3
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 2.8e-30 136.0 98 62.2
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 1.2e-28 130.6 82 74.4
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 3.5e-28 129.0 91 73.6
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 2.9e-27 125.9 82 70.7
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 1.9e-26 123.2 82 70.7
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 1.6e-25 120.2 156 43.6
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 2.0e-23 113.2 65 81.5
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 3.7e-22 109.0 104 58.7
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 5.9e-20 101.7 69 66.7
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 1.2e-17 94.0 57 64.9
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 2.8e-17 92.8 119 36.1
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 1.8e-16 90.1 87 51.7
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 4.0e-16 89.0 48 87.5
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 9.8e-15 84.3 66 68.2
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 3.7e-14 82.4 46 82.6
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 5.4e-13 78.6 47 68.1
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 2.7e-12 76.3 51 78.4
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 6.0e-12 75.1 47 80.9
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 1.7e-11 73.6 46 63.0
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 5.6e-10 68.6 101 44.6
BraA09t38755Z Brassica rapa HOM05D005137 ORTHO05D006478 1.7e-06 57.0 32 87.5
arahy.Tifrunner.gnm1.ann1.2D5YI2 Arachis hypogaea HOM05D005137 ORTHO05D087236 6.4e-06 55.1 62 54.8


User provided reference genes

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