Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 5.0e-112 407.9 224 100.0
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 2.0e-97 359.4 224 86.6
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 1.5e-95 353.2 224 87.5
Medtr3g078610 Medicago truncatula HOM05D009845 ORTHO05D010624 8.6e-88 327.4 227 82.8
Glyma.04G178200 Glycine max HOM05D009845 ORTHO05D010624 5.6e-71 271.6 224 70.1
Glyma.04G178000 Glycine max HOM05D009845 ORTHO05D010624 1.2e-70 270.4 224 70.1
Phvul.009G182700 Phaseolus vulgaris HOM05D009845 ORTHO05D010624 2.8e-70 269.2 224 70.1
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 1.5e-68 263.5 224 71.4
Lalb_Chr08g0236141 Lupinus albus HOM05D009845 ORTHO05D010624 2.6e-60 236.1 224 67.0
Lalb_Chr23g0273071 Lupinus albus HOM05D009845 ORTHO05D010624 2.4e-58 229.6 224 65.6
arahy.Tifrunner.gnm1.ann1.XL5EFA Arachis hypogaea HOM05D009845 ORTHO05D010624 7.1e-58 228.0 223 65.9
arahy.Tifrunner.gnm1.ann1.XS77WZ Arachis hypogaea HOM05D009845 ORTHO05D010624 3.9e-56 222.2 226 64.6
VMungo1309G2800 Vigna mungo HOM05D009845 ORTHO05D010624 1.5e-55 220.3 227 63.4
arahy.Tifrunner.gnm1.ann1.L3Y80W Arachis hypogaea HOM05D009845 ORTHO05D010624 8.4e-51 204.5 223 61.9
arahy.Tifrunner.gnm1.ann1.W8CL8V Arachis hypogaea HOM05D009845 ORTHO05D010624 9.3e-50 201.1 243 57.6
arahy.Tifrunner.gnm1.ann1.3S39J7 Arachis hypogaea HOM05D009845 ORTHO05D010624 2.1e-46 189.9 251 55.0
TPR.G11219 Trifolium pratense HOM05D009845 ORTHO05D010624 5.6e-39 165.2 94 92.6
CANSAT16G0049 Cannabis sativa HOM05D009845 ORTHO05D010624 1.7e-19 100.5 94 59.6
Potri.004G049600 Populus trichocarpa HOM05D009845 ORTHO05D010624 6.5e-19 98.6 93 59.1
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 4.2e-18 95.9 93 58.1
MSTRG.25414 Avicennia marina HOM05D009845 ORTHO05D010624 2.7e-17 93.2 93 55.9
Sabra04G0031300 Salix brachista HOM05D009845 ORTHO05D010624 6.1e-17 92.0 92 55.4
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 7.9e-17 91.7 93 54.8
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 1.0e-16 91.3 93 53.8
Oeu033677.1 Olea europaea HOM05D009845 ORTHO05D010624 3.0e-16 89.7 93 53.8
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 3.0e-16 89.7 93 53.8
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 3.9e-16 89.4 92 53.3
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 8.7e-16 88.2 92 53.3
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 1.3e-14 84.3 133 42.9
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 1.3e-14 84.3 123 44.7
Nitab4.5_0000687g0270 Nicotiana tabacum HOM05D009845 ORTHO05D010624 2.8e-14 83.2 93 50.5
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 4.8e-14 82.4 134 42.5
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 1.1e-13 81.3 87 51.7
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 6.9e-13 78.6 72 55.6
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 9.0e-13 78.2 93 47.3
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 1.7e-11 73.9 130 39.2
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 3.8e-11 72.8 77 49.4
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 6.5e-11 72.0 122 38.5
Lsat_1_v5_gn_1_129701 Lactuca sativa HOM05D009845 ORTHO05D010624 8.5e-11 71.6 53 66.0
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 1.1e-10 71.2 137 35.8
HanXRQChr16g0506281 Helianthus annuus HOM05D029082 ORTHO05D010624 1.4e-10 70.9 48 68.8
ECA248G2152 Erigeron canadensis HOM05D029082 ORTHO05D010624 1.9e-10 70.5 48 68.8
HanXRQChr01g0004171 Helianthus annuus HOM05D029082 ORTHO05D010624 1.9e-10 70.5 48 66.7
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 1.9e-10 70.5 54 61.1
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 3.2e-10 69.7 70 54.3
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 5.5e-10 68.9 66 56.1
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 7.2e-10 68.6 128 40.6
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 2.1e-09 67.0 134 35.1
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 2.7e-09 66.6 93 43.0
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 2.7e-09 66.6 54 59.3
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 2.7e-09 66.6 137 37.2
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 6.1e-09 65.5 76 48.7
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 7.9e-09 65.1 70 51.4
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-08 64.3 63 54.0
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 1.4e-08 64.3 81 42.0
RcHm_v2.0_Chr6g0257981 Rosa chinensis HOM05D022571 ORTHO05D010624 2.3e-08 63.5 71 50.7
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 2.3e-08 63.5 76 46.1
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 3.0e-08 63.2 93 43.0
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.9e-08 62.8 54 55.6
SHI20512 Sapria himalayana HOM05D009845 ORTHO05D010624 3.9e-08 62.8 63 50.8
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 5.1e-08 62.4 80 45.0
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 5.1e-08 62.4 76 46.1
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 6.7e-08 62.0 112 35.7
TWI39G0104 Tripterygium wilfordii HOM05D011069 ORTHO05D010624 6.7e-08 62.0 47 59.6
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 8.8e-08 61.6 98 40.8
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 8.8e-08 61.6 60 50.0
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 1.1e-07 61.2 134 36.6
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 2.0e-07 60.5 76 43.4
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 2.0e-07 60.5 134 35.8
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 2.0e-07 60.5 80 41.2
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 2.6e-07 60.1 60 48.3
HPP92_004941 Vanilla planifolia HOM05D023446 ORTHO05D025972 3.3e-07 59.7 96 42.7
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 7.4e-07 58.5 93 39.8
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 9.7e-07 58.2 95 40.0
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 9.7e-07 58.2 61 49.2
Nn2g15526 Nelumbo nucifera HOM05D009845 ORTHO05D006814 9.7e-07 58.2 65 52.3
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 9.7e-07 58.2 76 43.4
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 1.3e-06 57.8 110 37.3
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 1.3e-06 57.8 93 34.4
Thhalv10001774m.g Eutrema salsugineum HOM05D011069 ORTHO05D010624 2.2e-06 57.0 60 55.0
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 2.2e-06 57.0 72 44.4
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 2.8e-06 56.6 82 37.8
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 2.8e-06 56.6 72 44.4
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 2.8e-06 56.6 83 42.2
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 3.7e-06 56.2 77 37.7
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 6.3e-06 55.5 108 37.0
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 8.2e-06 55.1 75 42.7
BcaNung05601 Brassica carinata HOM05D011069 ORTHO05D010624 8.2e-06 55.1 60 55.0
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 8.2e-06 55.1 44 56.8
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 8.2e-06 55.1 94 37.2


User provided reference genes

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