Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 4.6e-32 140.6 70 100.0
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 2.0e-27 125.2 70 85.7
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 2.0e-27 125.2 70 85.7
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 5.5e-25 117.1 72 81.9
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 7.2e-25 116.7 72 80.6
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 3.3e-22 107.8 70 78.6
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 3.3e-22 107.8 71 78.9
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 1.7e-21 105.5 70 74.3
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 1.6e-16 89.0 75 64.0
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 1.8e-15 85.5 79 58.2
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 9.7e-14 79.7 74 56.8
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.7e-13 79.0 78 53.8
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 2.2e-13 78.6 81 54.3
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.2e-13 78.6 81 56.8
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 2.2e-13 78.6 78 56.4
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 2.2e-13 78.6 76 60.5
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 2.8e-13 78.2 73 56.2
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 3.7e-13 77.8 75 58.7
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 3.7e-13 77.8 75 57.3
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 6.3e-13 77.0 77 57.1
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 6.3e-13 77.0 80 55.0
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 1.4e-12 75.9 78 55.1
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 1.8e-12 75.5 76 55.3
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 3.1e-12 74.7 74 54.1
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 5.3e-12 73.9 81 55.6
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 9.1e-12 73.2 74 51.4
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 9.1e-12 73.2 80 51.2
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 1.2e-11 72.8 77 53.2
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 1.6e-11 72.4 84 48.8
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 2.0e-11 72.0 79 49.4
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 2.0e-11 72.0 75 56.0
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.6e-11 71.6 80 55.0
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 3.5e-11 71.2 79 45.6
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 5.9e-11 70.5 81 53.1
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 5.9e-11 70.5 81 53.1
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 5.9e-11 70.5 81 53.1
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 5.9e-11 70.5 76 52.6
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 7.7e-11 70.1 81 49.4
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.3e-10 69.3 80 48.8
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.3e-10 69.3 80 48.8
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 1.3e-10 69.3 79 49.4
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 2.9e-10 68.2 81 51.9
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 3.8e-10 67.8 80 48.8
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 5.0e-10 67.4 74 50.0
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 5.0e-10 67.4 78 47.4
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 6.5e-10 67.0 74 50.0
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 8.5e-10 66.6 77 51.9
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.1e-09 66.2 74 48.6
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 1.1e-09 66.2 73 53.4
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.5e-09 65.9 76 48.7
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.9e-09 65.5 83 49.4
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.9e-09 65.5 83 49.4
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 1.9e-09 65.5 74 51.4
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 2.5e-09 65.1 74 48.6
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 2.5e-09 65.1 74 48.6
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 3.2e-09 64.7 78 48.7
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 3.2e-09 64.7 73 47.9
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 4.2e-09 64.3 80 50.0
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 5.5e-09 63.9 73 49.3
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 5.5e-09 63.9 81 45.7
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 5.5e-09 63.9 83 48.2
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 7.2e-09 63.5 83 48.2
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 9.4e-09 63.2 76 48.7
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 9.4e-09 63.2 84 46.4
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 9.4e-09 63.2 79 43.0
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 9.4e-09 63.2 69 50.7
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 9.4e-09 63.2 74 48.6
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 1.2e-08 62.8 73 49.3
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.2e-08 62.8 68 50.0
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 1.2e-08 62.8 76 48.7
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 1.6e-08 62.4 86 40.7
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 1.6e-08 62.4 74 47.3
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.6e-08 62.4 67 52.2
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 1.6e-08 62.4 84 44.0
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 2.1e-08 62.0 74 50.0
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 2.7e-08 61.6 79 45.6
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.7e-08 61.6 83 47.0
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 2.7e-08 61.6 78 48.7
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.7e-08 61.6 74 47.3
Glyma.14G206400 Glycine max HOM05D003533 ORTHO05D004009 2.7e-08 61.6 46 69.6
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.7e-08 61.6 80 46.2
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 3.6e-08 61.2 71 45.1
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 3.6e-08 61.2 69 49.3
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 8.0e-08 60.1 86 39.5
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 8.0e-08 60.1 82 43.9
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 8.0e-08 60.1 75 48.0
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 8.0e-08 60.1 88 42.0
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 8.0e-08 60.1 88 38.6
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 1.0e-07 59.7 84 46.4
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.0e-07 59.7 78 47.4
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.4e-07 59.3 72 47.2
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 1.8e-07 58.9 73 45.2
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 2.3e-07 58.5 85 41.2
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.3e-07 58.5 67 46.3
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 3.0e-07 58.2 84 39.3
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 4.0e-07 57.8 74 45.9
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 4.0e-07 57.8 85 40.0
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 4.0e-07 57.8 85 40.0
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 5.2e-07 57.4 80 43.8
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 5.2e-07 57.4 81 44.4
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 5.2e-07 57.4 86 39.5
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 6.7e-07 57.0 74 47.3
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 6.7e-07 57.0 74 47.3
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 8.8e-07 56.6 74 44.6
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 8.8e-07 56.6 74 44.6
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 8.8e-07 56.6 79 44.3
HanXRQChr02g0043831 Helianthus annuus HOM05D003533 ORTHO05D222724 1.2e-06 56.2 52 53.8
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 1.2e-06 56.2 71 47.9
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 1.2e-06 56.2 73 46.6
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 2.0e-06 55.5 81 40.7
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 2.6e-06 55.1 78 44.9
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 2.6e-06 55.1 77 45.5
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.3e-06 54.7 86 43.0
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 3.3e-06 54.7 74 43.2
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.3e-06 54.7 76 47.4
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 4.4e-06 54.3 79 44.3
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 4.4e-06 54.3 75 45.3
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 4.4e-06 54.3 77 41.6
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 4.4e-06 54.3 78 38.5
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 4.4e-06 54.3 68 47.1
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 4.4e-06 54.3 74 43.2
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 5.7e-06 53.9 77 41.6
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 7.5e-06 53.5 81 39.5
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 7.5e-06 53.5 85 40.0
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 7.5e-06 53.5 76 44.7
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 7.5e-06 53.5 72 43.1
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 9.7e-06 53.1 86 40.7
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 9.7e-06 53.1 69 49.3


User provided reference genes

Program Settings