Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16092_v3 Cicer arietinum L. HOM05D005301 ORTHO05D006433 0.0e+00 1133.2 599 100.0
Medtr1g107265 Medicago truncatula HOM05D005301 ORTHO05D006433 3.4e-293 1011.1 699 76.4
Psat6g217880 Pisum sativum HOM05D005301 ORTHO05D006433 8.5e-292 1006.5 664 78.9
arahy.Tifrunner.gnm1.ann1.11HRG0 Arachis hypogaea HOM05D005301 ORTHO05D006433 7.4e-280 966.8 667 76.3
Lj1g0016804 Lotus japonicus HOM05D005301 ORTHO05D006433 1.1e-278 963.0 663 75.4
Glyma.06G173200 Glycine max HOM05D005301 ORTHO05D006433 1.4e-278 962.6 661 75.8
Lalb_Chr11g0069731 Lupinus albus HOM05D005301 ORTHO05D006433 1.7e-276 955.7 664 75.0
Glyma.04G192600 Glycine max HOM05D005301 ORTHO05D006433 2.5e-275 951.8 662 75.4
Phvul.009G169100 Phaseolus vulgaris HOM05D005301 ORTHO05D006433 5.5e-275 950.7 661 74.7
Haze_07279 Corylus avellana HOM05D005301 ORTHO05D006433 4.5e-253 877.9 635 71.0
Prupe.5G157400 Prunus persica HOM05D005301 ORTHO05D006433 4.3e-251 871.3 670 68.1
QL10p005311 Quercus lobata HOM05D005301 ORTHO05D006433 4.3e-251 871.3 673 67.6
Cfa018895 Carpinus fangiana HOM05D005301 ORTHO05D006433 3.1e-249 865.1 672 67.4
Dinv11108 Davidia involucrata HOM05D005301 ORTHO05D006433 2.6e-248 862.1 679 66.9
CiPaw.11G012400 Carya illinoinensis HOM05D005301 ORTHO05D006433 2.9e-247 858.6 679 66.0
Ciclev10019136m.g Citrus clementina HOM05D005301 ORTHO05D006433 1.9e-246 855.9 681 65.3
MD06G1157400 Malus domestica HOM05D005301 ORTHO05D006433 3.0e-244 848.6 669 66.8
PGR083G1269 Punica granatum HOM05D005301 ORTHO05D006433 2.5e-243 845.5 683 64.7
Duzib205G0739 Durio zibethinus HOM05D005301 ORTHO05D006433 1.6e-242 842.8 703 64.2
Aa31LG3G5920 Aethionema arabicum HOM05D005301 ORTHO05D006433 1.5e-240 836.3 661 66.6
Eucgr.L01339 Eucalyptus grandis HOM05D005301 ORTHO05D006433 2.0e-240 835.9 680 64.4
Gohir.D12G190800 Gossypium hirsutum HOM05D005301 ORTHO05D006433 3.4e-240 835.1 677 65.4
RcHm_v2.0_Chr7g0191331 Rosa chinensis HOM05D005301 ORTHO05D006433 5.8e-240 834.3 674 65.7
TWI39G1189 Tripterygium wilfordii HOM05D005301 ORTHO05D006433 2.9e-239 832.0 678 65.9
CANSAT80G2324 Cannabis sativa HOM05D005301 ORTHO05D006433 3.7e-239 831.6 668 65.4
Gohir.A12G188000 Gossypium hirsutum HOM05D005301 ORTHO05D006433 8.3e-239 830.5 679 65.1
Gorai.008G204700 Gossypium raimondii HOM05D005301 ORTHO05D006433 8.3e-239 830.5 679 64.8
THA.LOC104825004 Tarenaya hassleriana HOM05D005301 ORTHO05D006433 4.1e-238 828.2 669 64.9
AT5G50310 Arabidopsis thaliana HOM05D005301 ORTHO05D006433 3.5e-237 825.1 669 64.6
Sed0013046 Sechium edule HOM05D005301 ORTHO05D006433 3.5e-237 825.1 667 64.5
GSVIVG01007548001 Vitis vinifera HOM05D005301 ORTHO05D006433 3.5e-237 825.1 673 64.2
Potri.015G090100 Populus trichocarpa HOM05D005301 ORTHO05D006433 1.0e-236 823.5 680 65.0
AL8G24360 Arabidopsis lyrata HOM05D005301 ORTHO05D006433 1.3e-236 823.2 670 64.3
Actinidia16194 Actinidia chinensis HOM05D005301 ORTHO05D006433 1.9e-235 819.3 677 63.8
Sabra15G0112300 Salix brachista HOM05D005301 ORTHO05D006433 1.6e-234 816.2 648 65.6
Cc04_g10470 Coffea canephora HOM05D005301 ORTHO05D006433 2.8e-234 815.5 658 64.6
FAN08G2537 Fragaria x ananassa HOM05D005301 ORTHO05D006433 2.8e-234 815.5 612 69.6
Oeu011576.1 Olea europaea HOM05D005301 ORTHO05D006433 4.7e-234 814.7 676 62.6
PGSC0003DMG400015238 Solanum tuberosum HOM05D005301 ORTHO05D006433 6.2e-234 814.3 675 63.6
FvH4_5g07300 Fragaria vesca HOM05D005301 ORTHO05D006433 8.1e-234 813.9 676 64.3
Nitab4.5_0003282g0130 Nicotiana tabacum HOM05D005301 ORTHO05D006433 1.8e-233 812.8 675 63.1
CsaV3_1G000790 Cucumis sativus L. HOM05D005301 ORTHO05D006433 2.3e-233 812.4 670 63.1
Nitab4.5_0010042g0030 Nicotiana tabacum HOM05D005301 ORTHO05D006433 2.3e-233 812.4 677 63.5
FAN18G2536 Fragaria x ananassa HOM05D005301 ORTHO05D006433 8.9e-233 810.4 676 64.1
TAR374G1436 Trochodendron aralioides HOM05D005301 ORTHO05D006433 3.7e-231 805.1 675 62.8
Aqoxy5G03589 Aquilegia oxysepala HOM05D005301 ORTHO05D006433 4.9e-231 804.7 670 63.3
Sopen03g030520 Solanum pennellii HOM05D005301 ORTHO05D006433 1.4e-230 803.1 676 62.6
CAN.G352.5 Capsicum annuum HOM05D005301 ORTHO05D006433 1.9e-230 802.7 676 62.6
FAN04G2720 Fragaria x ananassa HOM05D005301 ORTHO05D006433 1.9e-230 802.7 681 63.6
vmacro19243 Vaccinium macrocarpon HOM05D005301 ORTHO05D006433 1.9e-230 802.7 724 60.4
Rhsim08G0184700 Rhododendron simsii HOM05D005301 ORTHO05D006433 3.2e-230 802.0 667 63.7
Carub.0008s1035 Capsella rubella HOM05D005301 ORTHO05D006433 5.4e-230 801.2 663 63.7
Solyc03g111390.4 Solanum lycopersicum HOM05D005301 ORTHO05D006433 7.1e-230 800.8 676 62.6
CARHR258240 Cardamine hirsuta HOM05D005301 ORTHO05D006433 2.1e-229 799.3 672 62.9
Migut.I00257 Erythranthe guttata HOM05D005301 ORTHO05D006433 2.3e-228 795.8 679 62.4
FAN13G0064 Fragaria x ananassa HOM05D005301 ORTHO05D006433 2.3e-228 795.8 698 61.9
Nn4g22465 Nelumbo nucifera HOM05D005301 ORTHO05D006433 3.0e-228 795.4 673 62.0
Thhalv10012907m.g Eutrema salsugineum HOM05D005301 ORTHO05D006433 1.5e-227 793.1 666 62.9
Sp6g12390 Schrenkiella parvula HOM05D005301 ORTHO05D006433 2.5e-227 792.3 659 63.4
HanXRQChr09g0272861 Helianthus annuus HOM05D005301 ORTHO05D006433 3.3e-227 792.0 672 61.6
Sc22g0004050 Simmondsia chinensis HOM05D005301 ORTHO05D006433 7.3e-227 790.8 671 63.2
ECA232G2312 Erigeron canadensis HOM05D005301 ORTHO05D006433 9.6e-227 790.4 667 62.7
PSO063G0990 Papaver somniferum HOM05D005301 ORTHO05D006433 4.7e-226 788.1 648 62.8
Lsat_1_v5_gn_4_78900 Lactuca sativa HOM05D005301 ORTHO05D006433 1.2e-224 783.5 669 61.9
BcaC01g04820 Brassica carinata HOM05D005301 ORTHO05D006433 5.8e-224 781.2 662 62.1
CDE02G1357 Ceratophyllum demersum HOM05D005301 ORTHO05D006433 7.6e-224 780.8 652 62.7
BolC3t15670H Brassica oleracea HOM05D005301 ORTHO05D006433 6.4e-223 777.7 661 62.5
PSO782G4848 Papaver somniferum HOM05D005301 ORTHO05D006433 1.1e-222 776.9 655 61.8
SalBow4G2023 Salvia bowleyana HOM05D005301 ORTHO05D006433 1.1e-222 776.9 663 61.8
MD14G1164000 Malus domestica HOM05D005301 ORTHO05D006433 1.0e-220 770.4 684 61.1
COL.COLO4_09264 Corchorus olitorius HOM05D005301 ORTHO05D006433 2.8e-218 762.3 586 69.1
ClCG06G017670 Citrullus lanatus HOM05D005301 ORTHO05D006433 3.6e-218 761.9 624 63.9
BraA03t11987Z Brassica rapa HOM05D005301 ORTHO05D006433 8.1e-218 760.8 661 61.3
SGA_v2.0_scaffold102G29851 Striga asiatica HOM05D005301 ORTHO05D006433 8.1e-218 760.8 689 59.5
A03p27760 Brassica napus HOM05D005301 ORTHO05D006433 3.1e-217 758.8 661 61.1
EL10Ac7g18070 Beta vulgaris HOM05D005301 ORTHO05D006433 9.0e-217 757.3 685 59.4
C03p33480 Brassica napus HOM05D005301 ORTHO05D006433 3.8e-215 751.9 689 58.5
Manes.06G114900 Manihot esculenta HOM05D005301 ORTHO05D006433 2.4e-214 749.2 606 65.5
Os04g0483600 Oryza sativa ssp. japonica HOM05D005301 ORTHO05D006433 1.6e-213 746.5 646 61.0
TPR.G3295 Trifolium pratense HOM05D005301 ORTHO05D006433 3.5e-213 745.3 459 83.7
AUR62001274 Chenopodium quinoa HOM05D005301 ORTHO05D006433 4.6e-213 745.0 634 62.9
arahy.Tifrunner.gnm1.ann1.86E75A Arachis hypogaea HOM05D005301 ORTHO05D006433 1.5e-211 740.0 542 72.0
MBI06_g16660_MAGBIO Magnolia biondii HOM05D005301 ORTHO05D006433 1.2e-208 730.3 636 61.6
ATR0824G115 Amborella trichopoda HOM05D004726 ORTHO05D005986 1.2e-205 720.3 630 60.3
MELO3C026231.2 Cucumis melo HOM05D005301 ORTHO05D006433 1.6e-205 719.9 657 59.5
Ah.08g218140 Amaranthus hybridus HOM05D005301 ORTHO05D006433 2.1e-205 719.5 644 61.3
BcaB01g02903 Brassica carinata HOM05D005301 ORTHO05D006433 3.7e-202 708.8 656 59.5
Thecc.03G122400 Theobroma cacao HOM05D005301 ORTHO05D006433 1.2e-200 703.7 597 62.3
VMungo1309G2118 Vigna mungo HOM05D005301 ORTHO05D006433 1.1e-198 697.2 441 81.0
Atru.chr9.1005 Acer truncatum HOM05D005301 ORTHO05D006433 7.9e-197 691.0 599 61.4
Pp3c16_5780 Physcomitrium patens HOM05D005301 ORTHO05D006433 3.4e-192 675.6 665 54.0
AagrBONN_evm.TU.Sc2ySwM_344.1825 Anthoceros agrestis HOM05D005301 ORTHO05D006433 1.7e-183 646.7 665 51.4
Hund05643 Selenicereus undatus HOM05D005301 ORTHO05D006433 5.0e-183 645.2 672 54.8
Peaxi162Scf00089g00721 Petunia axillaris HOM05D005301 ORTHO05D006433 1.4e-182 643.7 620 55.8
Eucgr.B00150 Eucalyptus grandis HOM05D005301 ORTHO05D006433 1.4e-180 637.1 607 57.3
SMO339G0058 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 7.4e-179 631.3 668 50.0
AUR62025732 Chenopodium quinoa HOM05D005301 ORTHO05D006433 4.2e-174 615.5 567 58.0
Mapoly0001s0540 Marchantia polymorpha HOM05D005301 ORTHO05D006433 1.0e-172 610.9 665 49.9
BcaC01g04819 Brassica carinata HOM05D005301 ORTHO05D006433 2.3e-164 583.2 599 55.6
Zm00001eb079290 Zea mays HOM05D005301 ORTHO05D006433 2.7e-157 559.7 555 54.8
DCAR_016415 Daucus carota HOM05D005301 ORTHO05D006433 7.5e-155 551.6 417 67.9
Cpa.g.sc52.37 Carica papaya HOM05D005301 ORTHO05D006433 6.3e-154 548.5 448 63.6
CBR_g40809 Chara braunii HOM05D005301 ORTHO05D006433 1.4e-153 547.4 754 43.5
Lj9A475G62 Lonicera japonica HOM05D005301 ORTHO05D006433 1.1e-118 431.4 441 54.0
QL04p021669 Quercus lobata HOM05D005301 ORTHO05D006433 1.2e-112 411.4 289 68.5
unitig_899.g15425 Utricularia gibba HOM05D005301 ORTHO05D006433 1.3e-111 407.9 461 52.3
HPP92_004591 Vanilla planifolia HOM05D005301 ORTHO05D006433 2.2e-98 364.0 393 50.4
Hund05630 Selenicereus undatus HOM05D005301 ORTHO05D006433 1.7e-95 354.4 377 52.5
HPP92_004584 Vanilla planifolia HOM05D005301 ORTHO05D006433 3.3e-86 323.6 267 62.2
CSS0025438 Camellia sinensis var. sinensis HOM05D005301 ORTHO05D006433 5.3e-84 316.2 292 59.2
MBI06_g32519_MAGBIO Magnolia biondii HOM05D005301 ORTHO05D006433 2.9e-74 283.9 260 58.5
Cpa.g.sc52.36 Carica papaya HOM05D005301 ORTHO05D006433 1.2e-72 278.5 223 67.7
PRCOL_00006105 Prasinoderma coloniale HOM05D005301 ORTHO05D006433 4.3e-70 270.0 446 37.2
SEGI_14135 Sequoiadendron giganteum HOM05D005301 ORTHO05D006433 5.9e-67 259.6 342 46.8
MCO16G658 Micromonas commoda HOM05D005301 ORTHO05D006433 2.1e-64 251.1 515 33.2
CSS0020618 Camellia sinensis var. sinensis HOM05D005301 ORTHO05D006433 5.3e-60 236.5 136 86.0
Actinidia19384 Actinidia chinensis HOM05D005301 ORTHO05D006433 2.0e-59 234.6 368 41.3
SMO200G0172 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 1.3e-58 231.9 682 31.2
Cre09.g398200 Chlamydomonas reinhardtii HOM05D005301 ORTHO05D006433 1.4e-57 228.4 526 33.3
SMO200G0119 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 1.8e-47 194.9 560 30.9
SMO200G0253 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 3.7e-45 187.2 526 29.7
Lj9A475G63 Lonicera japonica HOM05D005301 ORTHO05D006433 4.2e-41 173.7 208 45.7
SMO307G0058 Selaginella moellendorffii HOM05D003015 ORTHO05D003733 3.1e-36 157.5 408 30.4
SMO024G0003 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 1.0e-34 152.5 518 29.5
SEGI_22253 Sequoiadendron giganteum HOM05D005301 ORTHO05D006433 5.5e-33 146.7 132 55.3
Eucgr.B00154 Eucalyptus grandis HOM05D005301 ORTHO05D006433 2.7e-32 144.4 141 53.2
SMO200G0165 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 6.3e-29 133.3 319 33.9
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 1.1e-25 122.5 104 62.5
Lsat_1_v5_gn_9_521 Lactuca sativa HOM05D005301 ORTHO05D006433 3.3e-25 120.9 70 78.6
Lsat_1_v5_gn_2_63001 Lactuca sativa HOM05D005301 ORTHO05D006433 2.1e-24 118.2 70 77.1
SMO089G0014 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 4.0e-23 114.0 505 26.5
SMO001G0006 Selaginella moellendorffii HOM05D003015 ORTHO05D003733 1.8e-20 105.1 400 28.5
RcHm_v2.0_Chr7g0231611 Rosa chinensis HOM05D005301 ORTHO05D006433 4.1e-20 104.0 56 80.4
SMO089G0017 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 4.3e-17 94.0 168 33.3
RcHm_v2.0_Chr6g0266051 Rosa chinensis HOM05D005301 ORTHO05D006433 1.4e-15 89.0 49 79.6
SMO200G0133 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 1.4e-15 89.0 60 63.3
Hma1.2p1_0941F.1_g239720 Hydrangea macrophylla HOM05D005301 ORTHO05D006433 3.1e-15 87.8 57 75.4
Hma1.2p1_3384F.1_g335740 Hydrangea macrophylla HOM05D005301 ORTHO05D006433 1.2e-14 85.9 40 92.5
Peaxi162Scf00089g00716 Petunia axillaris HOM05D005301 ORTHO05D006433 7.5e-14 83.2 54 83.3
Nitab4.5_0013392g0010 Nicotiana tabacum HOM05D001426 ORTHO05D001389 1.3e-13 82.4 40 87.5
Cre04.g217938 Chlamydomonas reinhardtii HOM05D005301 ORTHO05D006433 1.2e-11 75.9 218 30.3
arahy.Tifrunner.gnm1.ann1.K9835S Arachis hypogaea HOM05D000956 ORTHO05D003111 1.5e-09 68.9 270 24.8
CARHR289380 Cardamine hirsuta HOM05D000956 ORTHO05D003111 1.6e-08 65.5 250 22.8
Cre04.g217925 Chlamydomonas reinhardtii HOM05D039214 ORTHO05D006433 2.1e-08 65.1 246 26.4
SEGI_33193 Sequoiadendron giganteum HOM05D006700 ORTHO05D008196 6.2e-08 63.5 322 27.0
CAN.G352.12 Capsicum annuum HOM05D005301 ORTHO05D006433 1.1e-07 62.8 152 28.9
arahy.Tifrunner.gnm1.ann1.CFJ0KE Arachis hypogaea HOM05D000956 ORTHO05D003111 1.4e-07 62.4 146 28.8
MCO07G635 Micromonas commoda HOM05D001137 ORTHO05D003111 1.4e-07 62.4 117 29.9
Aa31LG4G4440 Aethionema arabicum HOM05D003320 ORTHO05D003941 4.0e-07 60.8 167 25.7
CANSAT56G2003 Cannabis sativa HOM05D004809 ORTHO05D006732 4.0e-07 60.8 258 25.2
ECA232G3125 Erigeron canadensis HOM05D004809 ORTHO05D006732 4.0e-07 60.8 262 24.8
HPP92_027049 Vanilla planifolia HOM05D000956 ORTHO05D003111 5.2e-07 60.5 249 21.7
Thecc.10G104900 Theobroma cacao HOM05D004809 ORTHO05D006732 1.2e-06 59.3 258 23.6
AagrBONN_evm.TU.Sc2ySwM_344.1606 Anthoceros agrestis HOM05D001137 ORTHO05D005066 1.5e-06 58.9 150 29.3
Eucgr.H03862 Eucalyptus grandis HOM05D001137 ORTHO05D005066 2.6e-06 58.2 239 24.3
MD16G1173400 Malus domestica HOM05D001137 ORTHO05D005066 2.6e-06 58.2 109 35.8
Glyma.04G160700 Glycine max HOM05D003320 ORTHO05D003941 3.4e-06 57.8 144 30.6
Lsat_1_v5_gn_0_20160 Lactuca sativa HOM05D003043 ORTHO05D003652 4.4e-06 57.4 40 65.0
Gohir.D12G091000 Gossypium hirsutum HOM05D004809 ORTHO05D006732 5.8e-06 57.0 258 22.9
Gorai.008G098400 Gossypium raimondii HOM05D004809 ORTHO05D006732 5.8e-06 57.0 258 22.9
HanXRQChr13g0388221 Helianthus annuus HOM05D001137 ORTHO05D005066 7.5e-06 56.6 110 34.5
Lj4g0021111 Lotus japonicus HOM05D001137 ORTHO05D005066 9.8e-06 56.2 124 33.1


User provided reference genes

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