Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1966.4 1014 100.0
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1690.6 1015 86.7
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1657.9 1016 86.3
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1562.0 1012 79.3
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1561.6 1013 79.6
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1560.0 1013 79.0
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1536.9 1015 78.0
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1529.2 1015 77.6
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 0.0e+00 1503.4 899 87.0
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 0.0e+00 1451.8 1049 72.9
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1275.8 1013 66.1
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1269.6 1013 66.1
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1261.5 1011 64.9
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1252.7 994 65.3
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1252.3 1011 64.9
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1245.3 1014 64.6
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1244.6 1015 63.9
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1238.0 1011 64.4
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1237.2 1012 64.1
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1234.6 1012 64.0
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1233.4 1010 64.8
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1232.6 1046 61.6
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1221.1 1013 62.9
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1219.5 1012 62.7
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1218.4 990 64.0
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1218.0 1013 62.8
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1214.1 1013 62.4
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1213.4 1014 63.1
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1212.6 1010 61.8
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1211.8 1012 61.5
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1211.8 1013 61.6
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1209.9 1018 62.3
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1201.0 1013 61.0
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1200.3 1011 61.8
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1199.5 994 62.6
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1195.6 1013 60.8
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1184.9 1015 61.0
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1175.2 1011 61.0
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1173.3 733 81.6
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1161.0 1016 60.5
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1147.1 1014 60.2
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1145.6 1021 59.0
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1145.2 1015 60.8
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 0.0e+00 1140.9 770 77.3
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1139.4 1017 59.0
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1130.2 1006 58.5
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1127.1 993 59.6
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1126.7 1013 57.7
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 0.0e+00 1125.5 902 65.6
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 0.0e+00 1124.0 1041 57.9
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1121.3 1020 58.0
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1120.1 1033 57.8
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1120.1 1066 56.9
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1114.0 1016 58.4
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 0.0e+00 1101.3 1010 57.1
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1099.3 1008 58.1
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1092.8 1016 57.1
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1089.3 1016 57.6
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1088.6 1016 58.1
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1088.2 1013 57.7
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1087.0 1013 57.7
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1087.0 1018 57.2
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1086.2 1005 57.1
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1078.5 1018 57.1
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1077.0 1014 57.2
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.4e-310 1068.9 1048 54.5
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 6.9e-310 1067.4 1019 56.3
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 2.0e-309 1065.8 979 57.4
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 5.8e-309 1064.3 990 57.1
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 8.4e-308 1060.4 1019 56.4
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 4.2e-307 1058.1 1015 56.7
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 1.6e-306 1056.2 1016 56.4
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 2.1e-306 1055.8 1019 56.0
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 4.5e-301 1038.1 1022 56.2
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 3.8e-300 1035.0 1025 56.3
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 4.9e-300 1034.6 993 56.8
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 1.4e-299 1033.1 969 57.7
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 2.1e-298 1029.2 1019 56.0
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 2.7e-298 1028.9 1019 55.9
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 9.6e-296 1020.4 1016 55.9
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 3.8e-292 1008.4 1039 54.7
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 1.4e-291 1006.5 1022 54.1
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 3.3e-288 995.3 850 63.1
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 7.4e-288 994.2 1026 54.4
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 2.9e-284 982.2 995 53.8
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 8.7e-281 970.7 1032 52.9
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 7.4e-280 967.6 1014 53.0
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 4.8e-279 964.9 973 55.0
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 3.8e-276 955.3 1015 53.4
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 3.7e-271 938.7 1016 51.9
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 2.6e-269 932.6 993 50.1
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 7.7e-269 931.0 1016 50.8
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 7.2e-251 871.3 1025 49.1
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.4e-192 676.4 656 56.7
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 6.4e-191 672.2 656 56.6
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.6e-181 641.0 626 58.5
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 6.0e-181 639.0 679 53.0
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 1.5e-168 597.8 584 53.1
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 1.5e-168 597.8 561 59.0
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 1.4e-161 574.7 1060 35.5
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 2.4e-153 547.4 1090 34.0
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 2.5e-150 537.3 529 56.1
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 5.3e-137 493.0 965 36.3
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 3.8e-135 486.9 344 70.9
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 5.0e-103 380.2 389 50.4
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 5.6e-102 376.7 1136 29.1
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 2.3e-95 354.8 1126 29.0
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.4e-89 335.5 442 42.3
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 5.1e-87 327.0 330 53.3
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 4.8e-77 293.9 370 45.9
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 2.7e-64 251.5 260 52.3
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 1.1e-60 239.6 560 33.8
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 6.4e-58 230.3 217 58.5
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.5e-46 192.6 144 63.9
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 4.3e-46 191.0 223 49.3
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 1.7e-42 179.1 149 64.4
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 2.2e-34 152.1 221 38.5
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 2.5e-33 148.7 150 50.0
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 1.2e-27 129.8 431 29.0
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 1.9e-25 122.5 172 43.6
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.6e-24 119.4 103 57.3
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.2e-23 114.4 78 66.7
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.6e-19 102.1 126 42.1
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.6e-19 102.1 66 69.7
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 3.5e-19 101.7 147 38.1
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.3e-18 99.8 66 68.2
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 2.9e-18 98.6 64 71.9
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.1e-16 92.4 105 46.7
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 3.6e-16 91.7 77 53.2
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 1.0e-15 90.1 64 68.8
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 1.8e-15 89.4 219 35.2
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 2.2e-13 82.4 146 39.7
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 1.2e-11 76.6 241 29.5
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 2.7e-11 75.5 72 51.4
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 2.9e-10 72.0 58 48.3
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 2.9e-10 72.0 58 48.3
PRCOL_00001784 Prasinoderma coloniale HOM05D005223 ORTHO05D006449 8.5e-10 70.5 471 27.2
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 1.2e-08 66.6 34 88.2
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 2.1e-08 65.9 794 22.2
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 6.8e-07 60.8 52 63.5
Actinidia19388 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.6e-06 58.9 34 76.5
MD06G1154000 Malus domestica HOM05D005223 ORTHO05D006449 3.4e-06 58.5 47 53.2


User provided reference genes

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