Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 1.4e-91 339.7 184 100.0
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 1.0e-78 297.0 184 86.4
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 4.9e-73 278.1 185 82.7
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 1.9e-72 276.2 184 81.5
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 6.2e-60 234.6 185 71.9
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 2.7e-55 219.2 183 72.7
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 4.6e-55 218.4 188 69.7
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 1.3e-54 216.9 185 71.9
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 7.3e-53 211.1 169 70.4
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 6.2e-52 208.0 202 63.9
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 2.4e-51 206.1 198 61.1
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 5.8e-50 201.4 197 60.4
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 9.9e-50 200.7 210 61.4
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 9.3e-48 194.1 198 60.1
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.2e-47 193.7 184 60.9
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.6e-47 193.4 196 59.2
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 1.6e-47 193.4 196 59.2
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 7.9e-47 191.0 195 59.0
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.0e-46 190.7 199 58.8
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 1.3e-46 190.3 129 82.2
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 3.9e-46 188.7 198 59.1
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 3.9e-46 188.7 204 57.4
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 6.7e-46 188.0 183 59.6
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 8.7e-46 187.6 244 52.9
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 8.7e-46 187.6 244 52.9
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 7.4e-45 184.5 189 60.3
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 9.6e-45 184.1 182 58.8
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 1.3e-44 183.7 174 59.8
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 1.3e-44 183.7 185 60.5
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 2.1e-44 183.0 188 57.4
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 3.7e-44 182.2 187 57.8
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.1e-43 180.6 187 57.2
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.1e-43 180.6 188 56.9
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 2.4e-43 179.5 183 58.5
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 3.1e-43 179.1 210 55.2
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 3.1e-43 179.1 203 55.7
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 4.0e-43 178.7 179 59.2
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 5.3e-43 178.3 177 57.6
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 9.0e-43 177.6 203 55.2
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 9.0e-43 177.6 203 55.7
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 9.0e-43 177.6 178 60.7
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 1.5e-42 176.8 188 58.0
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 2.0e-42 176.4 171 57.3
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 5.8e-42 174.9 186 54.8
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 1.0e-41 174.1 188 55.9
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 4.9e-41 171.8 178 57.3
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 1.1e-40 170.6 170 60.0
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 1.1e-40 170.6 210 51.9
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.4e-40 170.2 186 56.5
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.4e-40 170.2 186 56.5
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 1.9e-40 169.9 190 55.3
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 3.2e-40 169.1 170 58.2
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 4.2e-40 168.7 182 56.0
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 5.5e-40 168.3 188 56.4
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 7.1e-40 167.9 185 53.5
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 1.2e-39 167.2 198 55.6
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 1.2e-39 167.2 186 52.2
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 2.1e-39 166.4 182 53.3
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 2.1e-39 166.4 175 57.1
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 4.6e-39 165.2 179 57.0
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 1.0e-38 164.1 193 51.3
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 1.3e-38 163.7 176 56.8
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 2.3e-38 162.9 183 52.5
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 6.7e-38 161.4 200 54.0
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 8.7e-38 161.0 191 51.3
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 1.5e-37 160.2 191 52.4
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 3.3e-37 159.1 173 56.6
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 3.3e-37 159.1 252 44.4
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 3.3e-37 159.1 182 53.3
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 7.4e-37 157.9 200 53.5
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 9.6e-37 157.5 174 54.0
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 1.6e-36 156.8 202 51.0
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 1.6e-36 156.8 174 53.4
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 2.8e-36 156.0 168 54.2
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 4.8e-36 155.2 207 48.8
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 1.1e-35 154.1 179 53.6
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 1.8e-35 153.3 178 52.8
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 1.8e-35 153.3 178 52.2
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 1.8e-35 153.3 178 52.8
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 1.8e-35 153.3 202 48.5
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 1.8e-35 153.3 201 48.3
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 1.8e-35 153.3 182 52.7
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 3.1e-35 152.5 178 51.7
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 9.0e-35 151.0 188 51.6
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 9.0e-35 151.0 197 48.7
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 1.5e-34 150.2 177 52.0
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 2.0e-34 149.8 168 52.4
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 2.0e-34 149.8 174 52.9
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 2.6e-34 149.4 175 55.4
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 4.5e-34 148.7 197 48.2
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 7.6e-34 147.9 189 53.4
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 1.0e-33 147.5 203 46.8
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 1.0e-33 147.5 207 47.3
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 2.2e-33 146.4 182 48.9
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 6.5e-33 144.8 177 50.8
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 1.1e-32 144.1 177 52.5
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 1.9e-32 143.3 184 48.9
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 1.9e-32 143.3 175 52.0
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 7.2e-32 141.4 179 48.6
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 9.3e-32 141.0 186 50.0
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 6.1e-31 138.3 175 49.1
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 3.0e-30 136.0 196 48.5
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 5.1e-30 135.2 126 66.7
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 6.7e-30 134.8 178 50.0
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.9e-29 133.3 170 49.4
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 1.9e-29 133.3 209 43.5
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 5.7e-29 131.7 170 50.0
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 1.3e-28 130.6 164 49.4
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 6.3e-28 128.3 141 53.2
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 1.8e-27 126.7 185 49.2
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 4.1e-27 125.6 147 53.7
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 9.0e-27 124.4 164 48.8
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 9.0e-27 124.4 164 48.8
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 3.8e-25 119.0 181 49.2
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 8.5e-25 117.9 158 50.0
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 9.4e-24 114.4 141 52.5
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 7.9e-23 111.3 172 41.9
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 3.0e-22 109.4 170 44.1
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.5e-21 107.1 183 44.8
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 7.4e-21 104.8 150 46.0
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.3e-20 104.0 111 55.9
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 1.2e-18 97.4 164 37.8
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 2.6e-18 96.3 191 37.2
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 2.6e-18 96.3 137 47.4
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 4.5e-18 95.5 166 38.6
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 3.8e-17 92.4 116 50.0
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 9.4e-16 87.8 181 34.3
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 1.6e-15 87.0 171 38.6
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 2.1e-15 86.7 160 35.6
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 9.1e-11 71.2 58 63.8
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 5.0e-09 65.5 111 43.2
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 1.2e-07 60.8 100 37.0
Hund13632 Selenicereus undatus HOM05D005391 ORTHO05D006694 1.8e-06 57.0 152 31.6


User provided reference genes

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