Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 2.0e-261 905.2 448 100.0
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 8.2e-207 723.8 449 82.0
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 1.5e-205 719.5 445 80.4
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 4.5e-197 691.4 444 79.1
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 1.5e-192 676.4 437 78.7
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 1.5e-192 676.4 437 78.7
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 1.8e-177 626.3 457 70.0
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 8.9e-177 624.0 445 74.2
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 1.3e-151 540.4 414 68.4
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 4.9e-151 538.5 426 66.0
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 2.1e-146 523.1 425 66.4
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 3.5e-141 505.8 426 62.7
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 1.3e-140 503.8 459 59.9
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 2.0e-136 490.0 427 59.5
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 1.0e-132 477.6 422 59.2
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 1.7e-127 460.3 447 55.5
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 4.2e-126 455.7 441 56.7
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 6.0e-125 451.8 430 57.2
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 2.5e-118 429.9 428 54.4
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 4.6e-117 425.6 425 53.9
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 1.6e-114 417.2 458 51.3
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 2.4e-113 413.3 435 51.7
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 2.4e-113 413.3 438 51.4
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 4.0e-113 412.5 448 49.8
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 4.0e-113 412.5 423 53.4
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 9.0e-113 411.4 455 54.1
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 1.0e-111 407.9 423 54.4
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 1.7e-111 407.1 442 50.9
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 6.5e-111 405.2 444 50.9
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 1.8e-108 397.1 422 53.6
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 3.9e-108 396.0 429 53.6
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 4.3e-107 392.5 428 53.3
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.3e-106 391.0 433 52.9
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 2.2e-106 390.2 439 48.5
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 8.2e-106 388.3 420 51.7
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 3.1e-105 386.3 428 51.9
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 4.1e-105 386.0 428 51.9
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.2e-104 384.4 427 52.0
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.0e-104 383.6 423 53.0
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 2.6e-104 383.3 443 49.9
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 1.7e-103 380.6 433 51.0
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 5.0e-103 379.0 444 47.5
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 4.2e-102 375.9 433 48.5
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 4.2e-102 375.9 483 47.6
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 7.2e-102 375.2 455 48.4
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 2.1e-101 373.6 423 50.4
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 1.4e-100 370.9 421 48.9
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 3.0e-100 369.8 414 50.2
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 2.8e-98 363.2 431 48.3
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 3.1e-97 359.8 446 47.1
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 5.9e-96 355.5 377 51.2
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 2.2e-95 353.6 427 48.2
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 8.5e-95 351.7 437 46.9
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 6.1e-93 345.5 468 44.0
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 1.0e-92 344.7 425 45.4
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 1.0e-92 344.7 445 45.4
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 1.0e-92 344.7 420 49.0
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 1.0e-92 344.7 434 46.1
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 2.0e-91 340.5 424 46.0
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 9.7e-91 338.2 436 45.6
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 6.3e-90 335.5 422 44.5
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 8.2e-90 335.1 420 46.0
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 1.8e-89 334.0 417 45.8
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 3.1e-89 333.2 426 45.1
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 1.2e-88 331.3 427 44.5
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 1.2e-88 331.3 426 44.8
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 2.6e-88 330.1 416 44.5
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 1.9e-86 323.9 422 44.3
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 5.5e-86 322.4 421 43.2
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 9.4e-86 321.6 462 43.1
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 9.4e-86 321.6 459 42.7
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 8.0e-85 318.5 418 45.7
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 4.4e-83 312.8 404 46.8
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 5.9e-80 302.4 448 42.0
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 7.7e-80 302.0 450 42.0
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 1.7e-79 300.8 451 42.6
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 6.5e-79 298.9 445 42.7
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 2.7e-77 293.5 531 38.2
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 4.7e-77 292.7 424 44.3
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 1.0e-76 291.6 443 42.2
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 5.7e-75 285.8 163 84.7
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 5.7e-75 285.8 432 41.7
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 7.0e-73 278.9 415 41.4
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 2.6e-67 260.4 430 37.9
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 3.4e-67 260.0 178 71.3
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 9.8e-67 258.5 319 48.3
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 2.8e-66 256.9 437 36.6
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 3.5e-64 250.0 217 56.7
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 7.2e-62 242.3 320 48.1
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 1.2e-61 241.5 255 52.5
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 2.3e-60 237.3 437 36.8
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 1.2e-59 235.0 285 47.0
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 2.0e-59 234.2 173 67.6
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 2.6e-59 233.8 232 52.2
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 4.1e-57 226.5 322 42.9
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 5.4e-57 226.1 234 55.1
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 4.0e-52 209.9 456 32.5
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 3.4e-51 206.8 128 74.2
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 2.0e-48 197.6 159 57.2
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 4.6e-48 196.4 422 33.2
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 6.6e-47 192.6 155 56.8
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 4.3e-46 189.9 155 61.3
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.2e-45 188.3 155 61.3
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 3.6e-45 186.8 157 61.1
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 2.3e-44 184.1 163 58.3
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 4.4e-43 179.9 155 59.4
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 3.7e-42 176.8 262 45.0
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 1.4e-41 174.9 295 37.3
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 1.9e-41 174.5 480 31.7
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 5.4e-41 172.9 159 54.1
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 1.7e-39 167.9 235 42.6
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 3.0e-39 167.2 432 30.8
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 4.7e-37 159.8 173 49.1
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 3.1e-36 157.1 265 37.7
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 3.5e-32 143.7 126 54.0
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 7.8e-32 142.5 144 54.2
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 2.5e-30 137.5 221 39.8
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 2.5e-30 137.5 221 39.8
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 3.3e-30 137.1 125 56.0
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 9.6e-30 135.6 116 50.0
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 3.1e-28 130.6 287 33.4
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 7.6e-27 125.9 180 45.0
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 9.3e-25 119.0 143 39.2
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 6.6e-23 112.8 243 35.0
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 4.3e-22 110.2 357 28.9
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 9.6e-22 109.0 183 41.0
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 1.6e-21 108.2 129 37.2
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 8.1e-21 105.9 177 38.4
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 6.9e-20 102.8 134 44.8
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.4e-17 95.1 105 48.6
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 5.6e-14 83.2 159 39.0
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 3.6e-13 80.5 71 60.6
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 1.5e-11 75.1 159 33.3
Actinidia36808 Actinidia chinensis HOM05D005804 ORTHO05D006849 1.5e-06 58.5 48 54.2
Sabra15G0117400 Salix brachista HOM05D005804 ORTHO05D006849 1.9e-06 58.2 106 39.6


User provided reference genes

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