Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.4e-196 688.7 364 100.0
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 1.3e-112 410.6 364 65.1
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 3.4e-110 402.5 362 64.4
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.5e-105 387.1 364 62.4
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 4.0e-95 352.4 380 55.5
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 9.0e-87 324.7 378 52.4
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 2.0e-86 323.6 378 51.9
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 4.6e-83 312.4 378 51.3
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 5.0e-77 292.4 271 60.5
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 3.2e-76 289.7 348 50.6
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 3.3e-73 279.6 340 50.9
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 4.5e-70 269.2 378 46.6
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 7.7e-70 268.5 347 49.3
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 7.7e-70 268.5 367 47.7
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 3.8e-69 266.2 360 48.6
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 1.4e-68 264.2 374 46.0
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 4.7e-67 259.2 367 46.3
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.0e-65 253.8 384 43.8
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 2.6e-65 253.4 378 44.7
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 2.2e-64 250.4 353 46.2
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.8e-64 249.2 384 43.0
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 8.2e-64 248.4 379 43.0
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.1e-63 248.1 382 42.9
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.8e-63 247.3 376 43.4
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 7.0e-63 245.4 352 42.9
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 4.5e-62 242.7 379 43.3
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 1.3e-61 241.1 381 44.1
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.7e-61 240.7 371 43.4
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.9e-61 240.0 379 42.2
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 5.0e-61 239.2 382 44.2
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 5.0e-61 239.2 369 43.4
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 8.5e-61 238.4 381 43.6
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.1e-60 238.0 374 44.1
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 1.6e-59 234.2 386 43.0
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.6e-59 234.2 371 42.6
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.1e-59 233.8 349 43.3
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.1e-59 233.8 371 42.6
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 2.1e-59 233.8 372 44.6
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 3.6e-59 233.0 351 41.6
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 3.6e-59 233.0 377 43.2
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 6.1e-59 232.3 378 41.3
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.8e-58 230.7 378 41.0
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 2.3e-58 230.3 354 42.1
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 3.9e-58 229.6 433 38.6
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 3.9e-58 229.6 417 41.0
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.1e-57 228.0 344 42.4
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.1e-57 228.0 354 42.4
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 2.6e-57 226.9 354 42.1
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 4.4e-57 226.1 380 42.9
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 9.7e-57 224.9 381 40.9
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 1.3e-56 224.6 360 44.2
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.7e-56 224.2 340 43.2
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 6.3e-56 222.2 350 42.0
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.8e-55 220.7 351 42.7
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.8e-55 220.7 379 40.9
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 3.1e-55 219.9 414 37.0
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 4.1e-55 219.5 381 40.7
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 4.1e-55 219.5 354 41.2
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.2e-54 218.0 353 40.5
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 1.2e-54 218.0 352 42.9
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.2e-54 218.0 352 42.0
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 4.5e-54 216.1 381 39.4
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 3.8e-53 213.0 353 41.1
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 3.8e-53 213.0 355 41.1
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 1.9e-52 210.7 441 34.9
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 3.2e-52 209.9 353 40.5
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 4.2e-52 209.5 389 39.6
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 5.5e-52 209.1 354 40.4
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.7e-51 206.8 286 46.9
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.3e-50 203.8 254 49.6
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 4.0e-50 203.0 381 37.8
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 6.8e-50 202.2 351 38.5
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 1.5e-49 201.1 424 37.7
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 9.8e-49 198.4 351 38.5
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 1.7e-48 197.6 380 36.8
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 4.8e-48 196.1 358 38.3
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 4.8e-48 196.1 354 39.3
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 4.8e-48 196.1 381 38.3
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.4e-47 194.5 351 39.3
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.4e-47 193.7 268 44.4
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 4.1e-47 193.0 354 38.4
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 9.1e-47 191.8 383 37.3
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 9.1e-47 191.8 352 38.1
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 9.1e-47 191.8 352 38.1
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 1.2e-46 191.4 355 39.7
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.2e-45 187.2 380 36.3
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 3.8e-45 186.4 381 36.2
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 6.5e-45 185.7 380 36.1
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 8.5e-45 185.3 354 39.0
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.5e-44 184.5 352 38.4
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 3.2e-44 183.3 315 40.6
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 2.7e-43 180.3 376 35.1
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 3.6e-43 179.9 318 39.3
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 3.6e-43 179.9 314 40.8
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 4.7e-43 179.5 388 35.8
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 1.8e-42 177.6 381 35.7
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 4.0e-42 176.4 380 36.1
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 2.0e-41 174.1 263 43.3
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 2.6e-41 173.7 194 53.1
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.3e-40 171.4 276 42.4
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 4.9e-40 169.5 350 36.9
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 6.3e-40 169.1 302 40.7
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 1.8e-39 167.5 362 35.9
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 9.1e-39 165.2 363 36.4
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 1.3e-37 161.4 308 38.0
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.7e-37 161.0 290 39.3
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.3e-37 160.6 236 44.5
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 3.8e-37 159.8 380 33.9
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.1e-36 158.3 352 36.1
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.9e-36 157.5 439 32.1
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.6e-35 154.5 242 42.1
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 3.6e-35 153.3 279 36.9
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 1.8e-34 151.0 241 42.7
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 3.0e-34 150.2 277 38.3
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 3.0e-34 150.2 264 39.0
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 4.0e-34 149.8 346 35.3
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 6.8e-34 149.1 276 38.4
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 1.5e-33 147.9 351 35.3
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.5e-33 147.9 351 35.3
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 9.8e-33 145.2 276 38.4
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 1.3e-32 144.8 307 36.8
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 3.7e-32 143.3 312 34.9
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 4.9e-32 142.9 354 34.2
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-31 141.4 312 34.9
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 2.4e-31 140.6 283 35.7
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 7.0e-31 139.0 263 37.6
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 4.6e-30 136.3 271 36.9
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.3e-29 134.8 298 34.9
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 2.3e-29 134.0 365 34.0
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.9e-29 133.7 295 35.9
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 6.6e-29 132.5 329 32.5
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 7.3e-28 129.0 226 39.4
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 3.6e-27 126.7 227 37.0
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 3.1e-26 123.6 253 36.4
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 5.2e-26 122.9 293 34.1
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 3.4e-25 120.2 219 37.4
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 7.5e-25 119.0 215 40.0
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.3e-24 118.2 410 28.8
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 3.0e-21 107.1 340 31.8
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 3.0e-21 107.1 310 32.9
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 6.2e-19 99.4 184 39.7
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 3.1e-18 97.1 185 40.0
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 5.2e-18 96.3 259 32.8
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 6.8e-18 95.9 208 34.1
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.0e-17 94.4 122 43.4
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 2.0e-17 94.4 149 40.3
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 2.6e-17 94.0 152 42.1
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 3.4e-17 93.6 120 45.0
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 5.8e-17 92.8 155 41.3
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.2e-15 87.0 293 28.0
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.6e-14 84.7 149 36.9
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.1e-14 84.3 149 36.9
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 6.0e-14 82.8 215 33.5
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 1.7e-13 81.3 256 29.3
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 2.3e-13 80.9 99 44.4
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 3.0e-13 80.5 92 54.3
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 8.6e-13 79.0 147 39.5
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 3.3e-12 77.0 295 26.4
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.2e-11 75.1 113 39.8
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 1.6e-11 74.7 217 30.9
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 1.6e-11 74.7 217 30.9
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 2.1e-11 74.3 105 44.8
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 4.7e-11 73.2 252 31.7
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.2e-10 69.7 325 24.3
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 3.4e-09 67.0 320 25.0
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 4.4e-09 66.6 188 31.4
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 2.2e-08 64.3 179 30.2
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 2.2e-08 64.3 179 30.2
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 1.4e-07 61.6 204 31.9
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 5.4e-07 59.7 294 27.2
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 9.2e-07 58.9 130 36.9
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-06 58.5 202 29.2
RcHm_v2.0_Chr5g0049341 Rosa chinensis HOM05D003707 ORTHO05D004309 6.0e-06 56.2 81 48.1


User provided reference genes

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