Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16024_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 1.4e-57 226.1 119 100.0
Medtr3g099773 Medicago truncatula HOM05D003540 ORTHO05D004012 6.5e-34 147.5 81 90.1
Psat5g050000 Pisum sativum HOM05D003540 ORTHO05D004012 1.3e-31 139.8 91 76.9
TPR.G6376 Trifolium pratense HOM05D003540 ORTHO05D004012 7.4e-30 134.0 91 74.7
Glyma.04G097000 Glycine max HOM05D003540 ORTHO05D004012 1.2e-27 126.7 83 79.5
arahy.Tifrunner.gnm1.ann1.QI1MS0 Arachis hypogaea HOM05D003540 ORTHO05D004012 4.5e-27 124.8 91 75.8
Glyma.06G098800 Glycine max HOM05D003540 ORTHO05D004012 7.6e-27 124.0 83 77.1
arahy.Tifrunner.gnm1.ann1.Q67T8J Arachis hypogaea HOM05D003540 ORTHO05D004012 1.0e-26 123.6 91 74.7
Lj1g0025059 Lotus japonicus HOM05D003540 ORTHO05D004012 3.8e-26 121.7 83 78.3
Manes.18G062100 Manihot esculenta HOM05D003540 ORTHO05D004012 1.9e-25 119.4 118 58.5
Lalb_Chr23g0270301 Lupinus albus HOM05D003540 ORTHO05D004012 2.5e-25 119.0 82 76.8
Duzib093G0958 Durio zibethinus HOM05D003540 ORTHO05D004012 3.2e-25 118.6 117 59.0
Phvul.009G034800 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 9.3e-25 117.1 83 73.5
Gohir.D06G033200 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.2e-24 116.7 117 58.1
Gorai.010G036600 Gossypium raimondii HOM05D003540 ORTHO05D004012 1.2e-24 116.7 117 58.1
Lj1g0000615 Lotus japonicus HOM05D003540 ORTHO05D004012 1.6e-24 116.3 83 75.9
Cpa.g.sc36.201 Carica papaya HOM05D003540 ORTHO05D004012 2.7e-24 115.5 85 74.1
Ca_05384_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 3.5e-24 115.2 82 78.0
CiPaw.07G169400 Carya illinoinensis HOM05D003540 ORTHO05D004012 6.1e-24 114.4 84 75.0
COL.COLO4_11964 Corchorus olitorius HOM05D003540 ORTHO05D004012 6.1e-24 114.4 117 57.3
Phvul.008G178700 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 6.1e-24 114.4 83 75.9
Thecc.08G066000 Theobroma cacao HOM05D003540 ORTHO05D004012 7.9e-24 114.0 83 72.3
Gohir.A06G032664 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.0e-23 113.6 117 57.3
THA.LOC104820588 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 1.3e-23 113.2 87 70.1
Psat2g066800 Pisum sativum HOM05D003540 ORTHO05D004012 1.8e-23 112.8 83 73.5
Glyma.14G179100 Glycine max HOM05D003540 ORTHO05D004012 6.7e-23 110.9 83 74.7
Ciclev10002815m.g Citrus clementina HOM05D003540 ORTHO05D004012 8.7e-23 110.5 87 71.3
Duzib116G0544 Durio zibethinus HOM05D003540 ORTHO05D004012 1.1e-22 110.2 117 57.3
THA.LOC104812634 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 1.5e-22 109.8 121 53.7
Aa31LG6G11550 Aethionema arabicum HOM05D003540 ORTHO05D004012 2.5e-22 109.0 76 73.7
Medtr5g065550 Medicago truncatula HOM05D003540 ORTHO05D004012 2.5e-22 109.0 83 72.3
MELO3C003542.2 Cucumis melo HOM05D003540 ORTHO05D004012 3.3e-22 108.6 86 69.8
Glyma.02G211500 Glycine max HOM05D003540 ORTHO05D004012 3.3e-22 108.6 83 73.5
Potri.005G159600 Populus trichocarpa HOM05D003540 ORTHO05D004012 5.7e-22 107.8 83 71.1
Atru.chr13.1061 Acer truncatum HOM05D003540 ORTHO05D004012 7.4e-22 107.5 86 70.9
VMungo0647G0300 Vigna mungo HOM05D003540 ORTHO05D004012 7.4e-22 107.5 83 72.3
Lalb_Chr10g0102641 Lupinus albus HOM05D003540 ORTHO05D004012 9.7e-22 107.1 117 58.1
TWI12G0801 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 9.7e-22 107.1 83 69.9
Aa31LG5G21170 Aethionema arabicum HOM05D003540 ORTHO05D004012 1.6e-21 106.3 87 66.7
Rhsim06G0075200 Rhododendron simsii HOM05D003540 ORTHO05D004012 2.2e-21 105.9 84 71.4
Sabra05G0121300 Salix brachista HOM05D003540 ORTHO05D004012 2.2e-21 105.9 117 54.7
arahy.Tifrunner.gnm1.ann1.41SNZJ Arachis hypogaea HOM05D003540 ORTHO05D004012 2.8e-21 105.5 83 69.9
arahy.Tifrunner.gnm1.ann1.NU78SD Arachis hypogaea HOM05D003540 ORTHO05D004012 2.8e-21 105.5 83 69.9
BcaNung06434 Brassica carinata HOM05D003540 ORTHO05D004012 3.7e-21 105.1 87 65.5
A08p25340 Brassica napus HOM05D003540 ORTHO05D004012 3.7e-21 105.1 86 66.3
BraA08t34486Z Brassica rapa HOM05D003540 ORTHO05D004012 3.7e-21 105.1 87 65.5
Dinv44828 Davidia involucrata HOM05D003540 ORTHO05D004012 3.7e-21 105.1 84 69.0
CsaV3_3G047800 Cucumis sativus L. HOM05D003540 ORTHO05D004012 4.8e-21 104.8 88 67.0
Duzib041G0585 Durio zibethinus HOM05D003540 ORTHO05D004012 4.8e-21 104.8 83 67.5
Sp1g25000 Schrenkiella parvula HOM05D003540 ORTHO05D004012 4.8e-21 104.8 87 65.5
Dinv42647 Davidia involucrata HOM05D003540 ORTHO05D004012 6.3e-21 104.4 83 71.1
BcaC06g35396 Brassica carinata HOM05D003540 ORTHO05D004012 8.2e-21 104.0 88 64.8
C03p75500 Brassica napus HOM05D003540 ORTHO05D004012 8.2e-21 104.0 87 64.4
BolC3t19806H Brassica oleracea HOM05D003540 ORTHO05D004012 8.2e-21 104.0 87 64.4
AL7G41530 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 1.1e-20 103.6 87 64.4
AT4G14600 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 1.1e-20 103.6 87 64.4
BcaB03g13908 Brassica carinata HOM05D003540 ORTHO05D004012 1.1e-20 103.6 87 64.4
BcaB07g32485 Brassica carinata HOM05D003540 ORTHO05D004012 1.1e-20 103.6 87 65.5
BolC7t42159H Brassica oleracea HOM05D003540 ORTHO05D004012 1.1e-20 103.6 86 66.3
QL09p016915 Quercus lobata HOM05D003540 ORTHO05D004012 1.1e-20 103.6 84 70.2
AT1G29060 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 1.8e-20 102.8 84 63.1
BcaNung06754 Brassica carinata HOM05D003540 ORTHO05D004012 1.8e-20 102.8 87 63.2
CARHR028280 Cardamine hirsuta HOM05D003540 ORTHO05D004012 1.8e-20 102.8 77 67.5
BcaC05g26921 Brassica carinata HOM05D003540 ORTHO05D004012 2.4e-20 102.4 87 65.5
C05p27740 Brassica napus HOM05D003540 ORTHO05D004012 2.4e-20 102.4 87 65.5
BolC5t31494H Brassica oleracea HOM05D003540 ORTHO05D004012 2.4e-20 102.4 85 67.1
Sed0022834 Sechium edule HOM05D003540 ORTHO05D004012 3.1e-20 102.1 86 65.1
Thhalv10009065m.g Eutrema salsugineum HOM05D003540 ORTHO05D004012 4.1e-20 101.7 87 63.2
Actinidia29606 Actinidia chinensis HOM05D003540 ORTHO05D004012 5.3e-20 101.3 84 69.0
AL1G42780 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 5.3e-20 101.3 87 63.2
CSS0047709 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 5.3e-20 101.3 84 69.0
PGSC0003DMG400024178 Solanum tuberosum HOM05D003540 ORTHO05D004012 5.3e-20 101.3 84 67.9
Nitab4.5_0013778g0010 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.2e-19 100.1 84 67.9
Peaxi162Scf00139g00825 Petunia axillaris HOM05D003540 ORTHO05D004012 1.2e-19 100.1 84 67.9
CSS0040126 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 1.5e-19 99.8 84 69.0
Carub.0001s2726 Capsella rubella HOM05D003540 ORTHO05D004012 2.0e-19 99.4 87 62.1
ClCG11G014400 Citrullus lanatus HOM05D003540 ORTHO05D004012 2.0e-19 99.4 98 61.2
Sopen04g029890 Solanum pennellii HOM05D003540 ORTHO05D004012 2.0e-19 99.4 84 66.7
Nitab4.5_0000008g0680 Nicotiana tabacum HOM05D003540 ORTHO05D004012 2.6e-19 99.0 84 66.7
Peaxi162Scf00725g00536 Petunia axillaris HOM05D003540 ORTHO05D004012 2.6e-19 99.0 84 67.9
PGSC0003DMG401002119 Solanum tuberosum HOM05D003540 ORTHO05D004012 2.6e-19 99.0 84 66.7
PGR031G1594 Punica granatum HOM05D003540 ORTHO05D004012 3.4e-19 98.6 84 64.3
Solyc02g063075.1 Solanum lycopersicum HOM05D003540 ORTHO05D004012 3.4e-19 98.6 84 66.7
Sopen02g014150 Solanum pennellii HOM05D003540 ORTHO05D004012 3.4e-19 98.6 84 66.7
CAN.G1538.2 Capsicum annuum HOM05D003540 ORTHO05D004012 4.5e-19 98.2 84 66.7
HanXRQChr08g0226211 Helianthus annuus HOM05D003540 ORTHO05D004012 4.5e-19 98.2 84 66.7
A07p10970 Brassica napus HOM05D003540 ORTHO05D004012 5.9e-19 97.8 84 64.3
BraA07t28888Z Brassica rapa HOM05D003540 ORTHO05D004012 5.9e-19 97.8 84 64.3
Cc10_g15500 Coffea canephora HOM05D003540 ORTHO05D004012 7.7e-19 97.4 84 65.5
Potri.002G102400 Populus trichocarpa HOM05D003540 ORTHO05D004012 7.7e-19 97.4 70 74.3
Solyc04g074940.4 Solanum lycopersicum HOM05D003540 ORTHO05D004012 1.0e-18 97.1 84 65.5
Prupe.1G526600 Prunus persica HOM05D003540 ORTHO05D004012 1.3e-18 96.7 71 71.8
HanXRQChr02g0046851 Helianthus annuus HOM05D003540 ORTHO05D004012 2.9e-18 95.5 84 65.5
Sed0006262 Sechium edule HOM05D003540 ORTHO05D004012 2.9e-18 95.5 86 61.6
CANSAT25G0001 Cannabis sativa HOM05D003540 ORTHO05D004012 3.8e-18 95.1 73 74.0
Lsat_1_v5_gn_1_2480 Lactuca sativa HOM05D003540 ORTHO05D004012 5.0e-18 94.7 84 64.3
Eucgr.F00400 Eucalyptus grandis HOM05D003540 ORTHO05D004012 6.5e-18 94.4 85 62.4
MSTRG.9688 Avicennia marina HOM05D003540 ORTHO05D004012 8.5e-18 94.0 73 72.6
ECA234G0792 Erigeron canadensis HOM05D003540 ORTHO05D004012 8.5e-18 94.0 84 63.1
Manes.02G147700 Manihot esculenta HOM05D003540 ORTHO05D004012 8.5e-18 94.0 84 66.7
Atru.chr3.3368 Acer truncatum HOM05D003185 ORTHO05D007711 1.1e-17 93.6 93 58.1
Nitab4.5_0001984g0080 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.1e-17 93.6 84 64.3
vmacro04682 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 1.1e-17 93.6 89 64.0
CAN.G460.5 Capsicum annuum HOM05D003540 ORTHO05D004012 1.4e-17 93.2 84 64.3
ECA247G1419 Erigeron canadensis HOM05D003540 ORTHO05D004012 5.5e-17 91.3 84 61.9
Lalb_Chr23g0270201 Lupinus albus HOM05D003540 ORTHO05D004012 9.4e-17 90.5 62 77.4
Hma1.2p1_0961F.1_g241695 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 1.2e-16 90.1 84 60.7
Hma1.2p1_0961F.1_g241710 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 1.2e-16 90.1 84 60.7
Migut.D01990 Erythranthe guttata HOM05D003540 ORTHO05D004012 2.1e-16 89.4 70 68.6
TAR625G0842 Trochodendron aralioides HOM05D003540 ORTHO05D004012 2.1e-16 89.4 82 61.0
SalBow6G2258 Salvia bowleyana HOM05D003540 ORTHO05D004012 2.7e-16 89.0 108 53.7
SalBow6G4055 Salvia bowleyana HOM05D003540 ORTHO05D004012 2.7e-16 89.0 108 53.7
GSVIVG01009122001 Vitis vinifera HOM05D003540 ORTHO05D004012 4.6e-16 88.2 84 58.3
AUR62019000 Chenopodium quinoa HOM05D003540 ORTHO05D004012 6.1e-16 87.8 73 65.8
AUR62027843 Chenopodium quinoa HOM05D003540 ORTHO05D004012 6.1e-16 87.8 74 64.9
DCAR_001735 Daucus carota HOM05D003540 ORTHO05D004012 6.1e-16 87.8 67 67.2
MSTRG.11484 Avicennia marina HOM05D003540 ORTHO05D004012 7.9e-16 87.4 71 66.2
Manes.02G214300 Manihot esculenta HOM05D003636 ORTHO05D005160 7.9e-16 87.4 66 72.7
EL10Ac3g06094 Beta vulgaris HOM05D003540 ORTHO05D004012 1.0e-15 87.0 72 66.7
Aqoxy6G00672 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 1.4e-15 86.7 82 57.3
MD15G1380400 Malus domestica HOM05D003540 ORTHO05D004012 1.4e-15 86.7 71 63.4
TAR381G0359 Trochodendron aralioides HOM05D003540 ORTHO05D004012 1.4e-15 86.7 82 59.8
Oeu013165.1 Olea europaea HOM05D003540 ORTHO05D004012 2.3e-15 85.9 72 63.9
Rhsim07G0209200 Rhododendron simsii HOM05D003540 ORTHO05D004012 5.1e-15 84.7 84 61.9
SGA_v2.0_scaffold5G02749 Striga asiatica HOM05D003540 ORTHO05D004012 5.1e-15 84.7 71 63.4
MBI06_g18789_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 6.7e-15 84.3 76 56.6
CSS0040517 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 8.8e-15 84.0 84 60.7
Oeu024713.1 Olea europaea HOM05D003540 ORTHO05D004012 8.8e-15 84.0 72 63.9
Migut.O00140 Erythranthe guttata HOM05D003540 ORTHO05D004012 1.1e-14 83.6 68 66.2
Aqoxy1G03155 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 1.5e-14 83.2 82 58.5
Haze_22354 Corylus avellana HOM05D003540 ORTHO05D004012 2.0e-14 82.8 58 74.1
Cfa013710 Carpinus fangiana HOM05D003540 ORTHO05D004012 2.5e-14 82.4 54 79.6
TWI74G0452 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 4.3e-14 81.6 77 59.7
Nn1g08254 Nelumbo nucifera HOM05D003540 ORTHO05D004012 7.4e-14 80.9 78 60.3
Ah.05g170560 Amaranthus hybridus HOM05D003540 ORTHO05D004012 9.7e-14 80.5 72 58.3
SGA_v2.0_scaffold37G14731 Striga asiatica HOM05D003540 ORTHO05D004012 9.7e-14 80.5 71 60.6
SalBow7G2649 Salvia bowleyana HOM05D003540 ORTHO05D004012 1.3e-13 80.1 71 60.6
AUR62002400 Chenopodium quinoa HOM05D003540 ORTHO05D004012 2.2e-13 79.3 73 60.3
COL.COLO4_27316 Corchorus olitorius HOM05D003540 ORTHO05D004012 2.8e-13 79.0 76 61.8
SalBow6G0357 Salvia bowleyana HOM05D003540 ORTHO05D004012 3.7e-13 78.6 71 59.2
Sc01g0000960 Simmondsia chinensis HOM05D003540 ORTHO05D004012 1.8e-12 76.3 64 64.1
GSVIVG01003618001 Vitis vinifera HOM05D003540 ORTHO05D004012 5.3e-12 74.7 67 61.2
Nitab4.5_0007681g0020 Nicotiana tabacum HOM05D003540 ORTHO05D004012 6.9e-12 74.3 63 68.3
QL06p047634 Quercus lobata HOM05D003540 ORTHO05D004012 6.9e-12 74.3 69 59.4
Sc23g0000530 Simmondsia chinensis HOM05D003540 ORTHO05D004012 6.9e-12 74.3 70 58.6
CiPaw.01G047900 Carya illinoinensis HOM05D003540 ORTHO05D004012 1.5e-11 73.2 70 60.0
MBI02_g18294_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 2.0e-11 72.8 82 53.7
Thecc.01G093400 Theobroma cacao HOM05D003540 ORTHO05D004012 2.6e-11 72.4 76 57.9
Gohir.A11G205600 Gossypium hirsutum HOM05D003540 ORTHO05D004012 3.4e-11 72.0 76 57.9
Nn1g05484 Nelumbo nucifera HOM05D003540 ORTHO05D004012 3.4e-11 72.0 63 60.3
Os03g0187700 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 3.4e-11 72.0 76 51.3
Gorai.007G236000 Gossypium raimondii HOM05D003540 ORTHO05D004012 5.9e-11 71.2 76 56.6
ATR0736G080 Amborella trichopoda HOM05D003540 ORTHO05D004012 1.0e-10 70.5 65 55.4
Gohir.D11G218000 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.0e-10 70.5 76 56.6
Lsat_1_v5_gn_6_105381 Lactuca sativa HOM05D003540 ORTHO05D004012 1.3e-10 70.1 64 60.9
HPP92_023309 Vanilla planifolia HOM05D003540 ORTHO05D004012 1.7e-10 69.7 73 50.7
FAN13G2229 Fragaria x ananassa HOM05D003540 ORTHO05D004012 2.9e-10 68.9 49 73.5
CDE05G3211 Ceratophyllum demersum HOM05D000364 ORTHO05D004012 3.8e-10 68.6 66 57.6
CDE05G3432 Ceratophyllum demersum HOM05D003540 ORTHO05D004012 8.5e-10 67.4 66 56.1
FvH4_5g35960 Fragaria vesca HOM05D003540 ORTHO05D004012 1.4e-09 66.6 52 69.2
FAN18G2789 Fragaria x ananassa HOM05D003540 ORTHO05D004012 1.4e-09 66.6 52 69.2
RcHm_v2.0_Chr7g0237701 Rosa chinensis HOM05D003540 ORTHO05D004012 1.4e-09 66.6 52 69.2
CSS0021893 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 1.9e-09 66.2 58 60.3
FAN08G1899 Fragaria x ananassa HOM05D003540 ORTHO05D004012 2.5e-09 65.9 49 71.4
MD08G1191600 Malus domestica HOM05D003540 ORTHO05D004012 2.5e-09 65.9 71 54.9
Zm00001eb107620 Zea mays HOM05D003540 ORTHO05D004012 3.2e-09 65.5 73 53.4
Zm00001eb325480 Zea mays HOM05D003540 ORTHO05D004012 9.4e-09 63.9 73 52.1
Oeu023447.1 Olea europaea HOM05D003540 ORTHO05D004012 1.6e-08 63.2 52 65.4
Os07g0577900 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 2.1e-08 62.8 70 51.4
SEGI_15699 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 2.7e-08 62.4 68 45.6
SEGI_39968 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 3.6e-08 62.0 65 52.3
AagrBONN_evm.TU.Sc2ySwM_228.2961 Anthoceros agrestis HOM05D003540 ORTHO05D004012 7.9e-08 60.8 60 50.0
TWI56G0839 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 7.9e-08 60.8 39 71.8
Cc04_g11820 Coffea canephora HOM05D003540 ORTHO05D004012 1.0e-07 60.5 84 46.4
PSO675G6040 Papaver somniferum HOM05D003540 ORTHO05D004012 1.8e-07 59.7 51 54.9
Sabra17G0067100 Salix brachista HOM05D003540 ORTHO05D004012 1.8e-07 59.7 92 44.6
AagrBONN_evm.TU.Sc2ySwM_228.2385 Anthoceros agrestis HOM05D003540 ORTHO05D004012 6.7e-07 57.8 69 46.4
vmacro21941 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 4.4e-06 55.1 84 44.0
Pp3c7_10130 Physcomitrium patens HOM05D003540 ORTHO05D004012 9.7e-06 53.9 49 51.0


User provided reference genes

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