Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.7e-170 602.1 334 100.0
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 2.0e-117 426.4 368 67.7
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 2.6e-117 426.0 326 73.9
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 3.8e-100 369.0 318 65.4
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 2.2e-95 353.2 328 60.7
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 3.5e-93 345.9 319 61.8
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 1.1e-91 340.9 326 60.7
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 5.5e-91 338.6 326 60.4
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 1.5e-88 330.5 329 62.0
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 4.5e-85 318.9 327 62.7
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 1.0e-84 317.8 326 57.1
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 1.3e-84 317.4 330 55.5
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 1.7e-84 317.0 324 59.6
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 4.3e-83 312.4 318 61.9
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 4.7e-82 308.9 330 56.1
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 8.0e-82 308.1 305 60.0
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.4e-81 307.4 330 54.8
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 5.7e-80 302.0 328 54.0
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 7.5e-80 301.6 331 55.0
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 4.9e-79 298.9 331 53.2
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 8.3e-79 298.1 330 54.2
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.1e-78 297.7 325 54.5
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.4e-78 297.4 332 53.9
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 1.8e-78 297.0 328 54.0
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.8e-78 297.0 331 53.8
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.4e-78 296.6 325 53.8
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 4.1e-78 295.8 329 54.1
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.0e-76 291.2 325 52.6
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.3e-76 290.8 326 54.9
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.3e-76 290.8 325 52.6
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 5.0e-76 288.9 321 55.1
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 6.6e-76 288.5 333 53.5
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.1e-75 287.7 333 53.2
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 1.1e-75 287.7 330 53.3
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.5e-75 287.3 330 52.1
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 1.9e-75 287.0 329 56.8
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 1.9e-75 287.0 330 53.6
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 2.5e-75 286.6 330 53.9
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 5.6e-75 285.4 330 52.4
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 7.3e-75 285.0 327 53.5
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 9.5e-75 284.6 330 51.5
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 9.5e-75 284.6 326 52.8
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 1.2e-74 284.3 332 52.1
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 2.8e-74 283.1 331 52.3
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.8e-73 280.4 329 50.8
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 2.3e-73 280.0 331 51.4
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 3.1e-73 279.6 382 46.9
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 5.2e-73 278.9 329 51.1
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 2.6e-72 276.6 332 51.5
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 3.4e-72 276.2 274 56.2
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 7.5e-72 275.0 329 51.1
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.7e-71 273.9 329 51.4
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.2e-71 273.5 331 51.4
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 2.2e-71 273.5 329 50.8
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 3.7e-71 272.7 330 53.0
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 4.9e-71 272.3 336 51.5
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 6.4e-71 271.9 331 49.8
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 1.9e-70 270.4 335 54.6
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 2.4e-70 270.0 329 51.1
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 4.6e-69 265.8 335 51.6
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 6.0e-69 265.4 330 52.4
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.3e-68 264.2 336 48.8
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 3.0e-68 263.1 330 50.3
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 3.9e-68 262.7 328 51.2
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 5.6e-67 258.8 329 48.0
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 9.5e-67 258.1 329 48.6
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.6e-66 257.3 333 50.5
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 4.7e-66 255.8 331 47.4
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 3.4e-64 249.6 327 47.4
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 3.4e-64 249.6 336 47.9
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 4.4e-64 249.2 329 48.9
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 5.8e-64 248.8 284 51.4
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 5.8e-64 248.8 288 51.0
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 9.8e-64 248.1 389 44.5
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 9.8e-64 248.1 389 43.2
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 1.7e-63 247.3 335 48.4
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 4.9e-63 245.7 328 45.1
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.9e-62 243.8 337 50.7
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 2.4e-62 243.4 333 48.3
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.2e-61 241.1 328 46.6
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 6.0e-61 238.8 335 46.6
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 5.1e-60 235.7 331 49.2
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.5e-59 233.4 288 51.4
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 2.5e-59 233.4 328 44.2
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 9.5e-59 231.5 401 41.4
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.1e-58 230.3 330 47.6
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 6.2e-58 228.8 332 46.7
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 6.2e-58 228.8 332 46.7
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 2.3e-57 226.9 342 48.2
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 8.9e-57 224.9 331 49.2
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 2.0e-56 223.8 326 43.9
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.3e-55 221.1 330 46.4
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.2e-55 220.3 330 46.4
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 2.9e-55 219.9 338 46.4
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-53 214.5 327 43.1
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 7.8e-53 211.8 289 52.2
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.3e-52 211.1 323 43.3
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.5e-51 207.6 323 42.7
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 5.6e-51 205.7 390 41.3
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 1.2e-50 204.5 339 45.4
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.6e-50 204.1 328 43.3
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 2.1e-50 203.8 277 49.1
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 1.1e-49 201.4 328 42.7
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 1.8e-49 200.7 360 40.6
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.8e-49 200.7 326 41.4
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 5.2e-49 199.1 265 48.7
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 6.9e-49 198.7 328 43.3
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 6.9e-49 198.7 331 43.5
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.2e-48 198.0 326 42.9
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.5e-48 197.6 307 41.0
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 2.6e-48 196.8 331 42.6
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 4.4e-48 196.1 293 42.7
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 5.8e-48 195.7 326 42.3
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.2e-47 193.7 305 40.0
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 7.1e-46 188.7 298 42.6
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 2.1e-45 187.2 360 40.0
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 8.7e-44 181.8 328 39.9
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 1.5e-43 181.0 309 40.1
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 3.6e-42 176.4 190 53.7
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 4.0e-41 172.9 309 38.5
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 5.3e-41 172.6 299 38.5
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 6.9e-41 172.2 311 42.4
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 2.6e-40 170.2 291 39.9
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 3.4e-40 169.9 308 41.6
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 7.6e-40 168.7 299 38.5
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 2.9e-39 166.8 299 38.1
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-38 164.5 325 39.1
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.4e-38 164.5 325 39.1
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.9e-38 164.1 262 47.7
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.9e-38 164.1 263 47.5
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 9.3e-38 161.8 394 37.3
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 2.5e-35 153.7 294 37.4
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 3.3e-35 153.3 325 38.2
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 5.6e-35 152.5 313 35.8
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 3.1e-33 146.7 124 58.9
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 1.7e-31 141.0 175 51.4
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 3.2e-30 136.7 154 48.7
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.2e-30 136.3 181 50.3
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.6e-29 134.4 279 40.1
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 8.7e-28 128.6 208 37.0
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.5e-27 127.9 287 37.3
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 4.8e-26 122.9 152 48.7
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 1.1e-25 121.7 257 42.0
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-25 120.9 156 48.1
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 2.0e-24 117.5 330 33.0
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.4e-24 116.7 164 45.7
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.5e-24 116.3 164 45.7
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.0e-23 115.2 310 34.8
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.8e-23 113.2 368 29.6
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 6.5e-23 112.5 130 50.0
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 1.9e-22 110.9 268 34.3
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.6e-21 107.8 135 57.0
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 2.1e-21 107.5 189 39.2
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 3.5e-21 106.7 135 55.6
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 4.6e-21 106.3 153 37.9
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.3e-20 104.8 103 60.2
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 1.3e-20 104.8 222 36.9
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.8e-20 104.4 165 41.8
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 2.3e-20 104.0 259 31.7
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.3e-18 98.2 199 38.7
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 4.1e-17 93.2 227 34.8
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.7e-15 87.8 374 29.4
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 1.1e-14 85.1 213 36.6
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 3.6e-13 80.1 96 53.1
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.3e-12 78.2 111 41.4
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 2.3e-12 77.4 182 33.0
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 2.3e-12 77.4 182 33.0
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 4.3e-11 73.2 224 31.7
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 4.3e-11 73.2 224 31.7
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 7.4e-11 72.4 86 45.3
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 1.3e-10 71.6 326 26.4
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 2.2e-10 70.9 95 50.5
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 1.8e-09 67.8 209 31.1
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 1.2e-08 65.1 103 49.5
Medtr5g064760 Medicago truncatula HOM05D003516 ORTHO05D004068 2.2e-07 60.8 166 37.3
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 2.9e-07 60.5 59 45.8
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.5e-06 57.4 47 61.7


User provided reference genes

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