Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 5.0e-145 517.7 252 100.0
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 1.1e-120 436.8 252 83.3
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 1.9e-120 436.0 252 82.5
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 3.4e-117 425.2 254 82.3
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 7.1e-115 417.5 254 81.5
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 2.1e-114 416.0 253 79.1
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 9.0e-110 400.6 257 77.0
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-106 389.8 252 75.4
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 2.1e-103 379.4 246 74.8
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 1.4e-102 376.7 260 72.3
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 5.3e-102 374.8 256 73.0
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 9.0e-102 374.0 246 74.0
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 5.8e-93 344.7 258 67.4
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 2.2e-92 342.8 252 67.1
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 3.2e-91 339.0 258 66.7
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 2.1e-90 336.3 257 64.6
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 1.0e-89 334.0 256 67.2
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 1.9e-88 329.7 251 65.3
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.5e-88 329.3 257 64.2
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 5.6e-88 328.2 257 63.8
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 5.6e-88 328.2 252 64.3
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 1.6e-87 326.6 253 65.6
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.7e-87 325.5 257 63.4
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 5.3e-86 321.6 255 64.7
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.2e-85 320.5 259 61.8
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 2.0e-85 319.7 255 64.7
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 4.5e-85 318.5 245 65.3
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 5.8e-85 318.2 259 59.8
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 1.0e-84 317.4 256 63.3
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.0e-84 317.4 253 62.8
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.3e-84 317.0 256 62.9
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.2e-84 316.2 257 63.8
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 2.2e-84 316.2 253 63.2
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 3.8e-84 315.5 253 61.7
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 3.8e-84 315.5 244 64.3
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 4.9e-84 315.1 253 61.3
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 6.5e-84 314.7 252 61.5
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 8.4e-84 314.3 255 63.9
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 8.4e-84 314.3 255 63.9
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 8.4e-84 314.3 256 60.5
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 3.2e-83 312.4 256 60.9
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.2e-83 312.4 256 60.2
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.2e-82 310.5 261 62.5
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 4.6e-82 308.5 243 63.0
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 2.3e-81 306.2 264 58.3
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 3.9e-81 305.4 227 66.1
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 5.1e-81 305.1 257 59.9
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 8.7e-81 304.3 176 78.4
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.1e-80 303.9 253 59.7
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.1e-80 303.9 250 60.0
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.5e-80 303.5 257 61.9
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.5e-80 302.8 254 59.4
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.5e-80 302.8 254 61.0
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 2.5e-80 302.8 290 54.1
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 4.3e-80 302.0 245 60.8
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 4.3e-80 302.0 257 59.9
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 1.6e-79 300.1 246 62.6
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 1.6e-79 300.1 216 69.4
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.4e-78 297.0 257 58.8
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.4e-78 297.0 260 57.7
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 4.1e-78 295.4 252 61.1
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 5.3e-78 295.0 254 58.7
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.5e-77 293.5 257 58.8
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 1.5e-77 293.5 258 58.1
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.0e-77 293.1 265 58.1
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 4.5e-77 292.0 278 56.5
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 4.5e-77 292.0 257 58.0
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 4.5e-77 292.0 253 56.9
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 5.9e-77 291.6 269 56.9
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 5.9e-77 291.6 262 56.1
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 7.7e-77 291.2 250 59.2
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 7.7e-77 291.2 257 58.0
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 1.3e-76 290.4 257 57.6
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.7e-76 290.0 262 56.5
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.7e-76 290.0 269 55.0
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 2.9e-76 289.3 259 57.1
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 2.9e-76 289.3 261 57.5
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 2.9e-76 289.3 269 55.0
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 5.0e-76 288.5 273 56.0
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 8.5e-76 287.7 258 57.0
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 8.5e-76 287.7 252 58.7
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 8.5e-76 287.7 252 58.7
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.1e-75 287.3 258 56.2
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 1.9e-75 286.6 258 56.6
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.2e-75 285.8 253 58.1
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.2e-75 285.8 177 71.8
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 2.1e-74 283.1 256 59.8
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 2.7e-74 282.7 254 56.7
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 3.6e-74 282.3 253 58.1
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 4.6e-74 282.0 170 74.7
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 4.6e-74 282.0 254 56.3
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 4.6e-74 282.0 252 56.7
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 6.1e-74 281.6 174 73.6
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 6.1e-74 281.6 180 71.1
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 7.9e-74 281.2 184 70.7
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 1.0e-73 280.8 260 57.3
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.0e-73 280.8 245 58.4
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.4e-73 280.4 249 57.8
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 1.8e-73 280.0 262 55.3
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 1.8e-73 280.0 258 55.4
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 3.9e-73 278.9 263 55.9
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 3.9e-73 278.9 263 54.8
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 6.7e-73 278.1 254 55.9
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 6.7e-73 278.1 254 56.7
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 8.8e-73 277.7 257 56.4
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 8.8e-73 277.7 181 72.4
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 8.8e-73 277.7 181 72.4
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 2.0e-72 276.6 262 55.7
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 3.3e-72 275.8 253 56.5
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 3.3e-72 275.8 174 73.6
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 7.4e-72 274.6 218 65.1
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 9.7e-72 274.2 216 64.8
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 2.8e-71 272.7 250 55.6
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 6.3e-71 271.6 252 55.6
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 1.1e-70 270.8 250 57.2
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 1.4e-70 270.4 243 56.8
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 3.1e-70 269.2 257 53.7
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.3e-70 268.5 150 81.3
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 9.1e-70 267.7 200 64.0
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 5.9e-69 265.0 218 60.6
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 3.8e-68 262.3 168 72.0
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 5.0e-68 261.9 262 54.6
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.4e-67 260.4 182 66.5
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.2e-67 259.2 256 52.3
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 7.2e-67 258.1 252 54.4
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 2.7e-66 256.1 231 56.7
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 4.7e-66 255.4 167 71.9
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.3e-60 237.3 181 63.5
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 1.7e-60 236.9 217 57.1
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 9.4e-59 231.1 137 78.1
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.6e-58 229.2 263 49.4
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 7.4e-56 221.5 167 60.5
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 2.8e-55 219.5 167 60.5
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 3.7e-55 219.2 258 49.2
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 6.3e-55 218.4 152 68.4
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 1.4e-54 217.2 110 90.0
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 2.4e-54 216.5 164 61.6
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.0e-53 213.4 251 47.8
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 6.5e-52 208.4 169 56.8
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 7.2e-51 204.9 144 62.5
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 2.7e-50 203.0 167 56.9
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 3.6e-50 202.6 166 56.0
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 8.3e-47 191.4 256 44.9
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 2.1e-42 176.8 257 43.2
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-40 170.6 143 62.9
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-40 170.6 208 47.6
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 2.0e-32 143.7 83 79.5
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 9.8e-32 141.4 135 54.1
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 5.6e-27 125.6 93 63.4
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 7.3e-27 125.2 213 32.4
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-26 124.4 78 73.1
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 6.1e-26 122.1 63 85.7
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.0e-25 121.3 123 54.5
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.8e-25 120.6 82 61.0
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 1.4e-22 110.9 78 66.7
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 7.0e-22 108.6 142 40.1
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.3e-20 104.4 67 73.1
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 3.6e-18 96.3 86 54.7
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 3.6e-18 96.3 65 63.1
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 6.4e-15 85.5 48 75.0
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 4.6e-13 79.3 39 87.2
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.0e-13 79.0 51 68.6
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.1e-12 75.9 51 68.6
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 5.1e-12 75.9 51 68.6
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-08 64.7 43 69.8
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 4.9e-07 59.3 101 38.6
arahy.Tifrunner.gnm1.ann1.T252JQ Arachis hypogaea HOM05D004168 ORTHO05D004999 4.1e-06 56.2 40 60.0


User provided reference genes

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