Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15891_v3 Cicer arietinum L. HOM05D007433 ORTHO05D009199 1.6e-49 199.1 104 100.0
TPR.G33670 Trifolium pratense HOM05D007433 ORTHO05D009199 1.0e-27 126.7 124 64.5
Medtr3g103330 Medicago truncatula HOM05D007433 ORTHO05D009199 2.5e-26 122.1 107 69.2
Psat5g037160 Pisum sativum HOM05D007433 ORTHO05D009199 5.7e-26 120.9 112 60.7
Phvul.009G073600 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 1.8e-24 115.9 113 64.6
VMungo1309G0469 Vigna mungo HOM05D007433 ORTHO05D009199 3.1e-24 115.2 112 65.2
Lj1g0004253 Lotus japonicus HOM05D007433 ORTHO05D009199 3.4e-23 111.7 118 61.0
Glyma.04G047400 Glycine max HOM05D007433 ORTHO05D009199 1.0e-22 110.2 82 74.4
Glyma.06G048300 Glycine max HOM05D007433 ORTHO05D009199 2.9e-22 108.6 114 62.3
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 8.4e-22 107.1 109 61.5
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 1.4e-21 106.3 115 58.3
Lalb_Chr08g0245211 Lupinus albus HOM05D007433 ORTHO05D009199 3.2e-21 105.1 112 61.6
Lalb_Chr11g0062981 Lupinus albus HOM05D007433 ORTHO05D009199 5.5e-21 104.4 119 57.1
GSVIVG01009308001 Vitis vinifera HOM05D007433 ORTHO05D009199 7.9e-20 100.5 112 58.0
Thecc.08G085300 Theobroma cacao HOM05D007433 ORTHO05D009199 3.0e-19 98.6 117 56.4
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 6.7e-19 97.4 111 56.8
Hma1.2p1_1170F.1_g263410 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 6.7e-19 97.4 113 57.5
Prupe.1G419900 Prunus persica HOM05D007433 ORTHO05D009199 6.7e-19 97.4 112 56.2
COL.COLO4_28471 Corchorus olitorius HOM05D007433 ORTHO05D009199 1.5e-18 96.3 116 55.2
Potri.014G013600 Populus trichocarpa HOM05D007433 ORTHO05D009199 1.9e-18 95.9 117 56.4
Actinidia19585 Actinidia chinensis HOM05D002375 ORTHO05D002457 9.7e-18 93.6 105 54.3
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 9.7e-18 93.6 109 55.0
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 1.6e-17 92.8 81 67.9
Haze_06413 Corylus avellana HOM05D007433 ORTHO05D009199 2.8e-17 92.0 110 52.7
Glyma.17G233300 Glycine max HOM05D007433 ORTHO05D009199 2.8e-17 92.0 102 58.8
Actinidia29630 Actinidia chinensis HOM05D001492 ORTHO05D001400 3.7e-17 91.7 109 51.4
CiPaw.08G051700 Carya illinoinensis HOM05D007433 ORTHO05D009199 8.2e-17 90.5 111 52.3
MD15G1066100 Malus domestica HOM05D007433 ORTHO05D009199 1.1e-16 90.1 108 53.7
Atru.chr13.862 Acer truncatum HOM05D007433 ORTHO05D009199 1.4e-16 89.7 115 51.3
Cfa013749 Carpinus fangiana HOM05D007433 ORTHO05D009199 1.8e-16 89.4 110 51.8
CiPaw.07G172700 Carya illinoinensis HOM05D007433 ORTHO05D009199 2.4e-16 89.0 111 50.5
ClCG05G026590 Citrullus lanatus HOM05D007433 ORTHO05D009199 3.1e-16 88.6 110 51.8
MELO3C016834.2 Cucumis melo HOM05D007433 ORTHO05D009199 3.1e-16 88.6 110 51.8
Sed0005155 Sechium edule HOM05D007433 ORTHO05D009199 3.1e-16 88.6 110 51.8
Gohir.A02G080400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 4.1e-16 88.2 113 54.9
Gohir.D02G088300 Gossypium hirsutum HOM05D007433 ORTHO05D009199 4.1e-16 88.2 113 54.9
Gorai.005G098900 Gossypium raimondii HOM05D007433 ORTHO05D009199 4.1e-16 88.2 113 54.9
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 6.9e-16 87.4 110 54.5
FvH4_2g32740 Fragaria vesca HOM05D007433 ORTHO05D009199 9.0e-16 87.0 109 49.5
FAN24G3110 Fragaria x ananassa HOM05D007433 ORTHO05D009199 9.0e-16 87.0 109 49.5
Potri.002G116200 Populus trichocarpa HOM05D007433 ORTHO05D009199 1.2e-15 86.7 115 52.2
Sopen04g031210 Solanum pennellii HOM05D007433 ORTHO05D009199 1.5e-15 86.3 116 49.1
CANSAT25G0221 Cannabis sativa HOM05D007433 ORTHO05D009199 2.0e-15 85.9 111 52.3
Sabra02G0091500 Salix brachista HOM05D007433 ORTHO05D009199 2.0e-15 85.9 93 59.1
RcHm_v2.0_Chr6g0309931 Rosa chinensis HOM05D007433 ORTHO05D009199 3.4e-15 85.1 107 50.5
FAN15G2820 Fragaria x ananassa HOM05D007433 ORTHO05D009199 4.5e-15 84.7 109 49.5
Peaxi162Scf00340g00061 Petunia axillaris HOM05D007433 ORTHO05D009199 4.5e-15 84.7 87 56.3
FAN20G2053 Fragaria x ananassa HOM05D007433 ORTHO05D009199 5.9e-15 84.3 110 49.1
PGSC0003DMG400004914 Solanum tuberosum HOM05D007433 ORTHO05D009199 5.9e-15 84.3 116 48.3
ECA247G0789 Erigeron canadensis HOM05D007433 ORTHO05D009199 7.7e-15 84.0 111 49.5
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 7.7e-15 84.0 117 54.7
FAN27G2289 Fragaria x ananassa HOM05D007433 ORTHO05D009199 1.0e-14 83.6 109 48.6
Nitab4.5_0013161g0010 Nicotiana tabacum HOM05D007433 ORTHO05D009199 1.0e-14 83.6 104 50.0
Solyc04g077570.1 Solanum lycopersicum HOM05D007433 ORTHO05D009199 1.3e-14 83.2 114 49.1
TAR376G0199 Trochodendron aralioides HOM05D007433 ORTHO05D009199 2.2e-14 82.4 112 50.9
VMungo0647G2383 Vigna mungo HOM05D007433 ORTHO05D009199 2.2e-14 82.4 108 51.9
AUR62035005 Chenopodium quinoa HOM05D007433 ORTHO05D009199 2.9e-14 82.0 75 57.3
Gorai.009G221600 Gossypium raimondii HOM05D007433 ORTHO05D009199 5.0e-14 81.3 99 51.5
TAR628G1336 Trochodendron aralioides HOM05D007433 ORTHO05D009199 5.0e-14 81.3 116 51.7
Gohir.D05G214900 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.1e-13 80.1 99 50.5
Nn5g30654 Nelumbo nucifera HOM05D007433 ORTHO05D009199 1.1e-13 80.1 108 51.9
Phvul.001G029300 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 1.9e-13 79.3 107 51.4
Gohir.A05G211600 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.5e-13 79.0 98 51.0
CAN.G1239.9 Capsicum annuum HOM05D007433 ORTHO05D009199 7.2e-13 77.4 109 46.8
Eucgr.F00094 Eucalyptus grandis HOM05D007433 ORTHO05D009199 1.2e-12 76.6 88 51.1
Gohir.D06G022200 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.7e-12 75.5 115 45.2
Gorai.010G026800 Gossypium raimondii HOM05D007433 ORTHO05D009199 3.6e-12 75.1 116 44.8
Lsat_1_v5_gn_1_480 Lactuca sativa HOM05D007433 ORTHO05D009199 3.6e-12 75.1 110 46.4
Cpa.g.sc142.56 Carica papaya HOM05D007433 ORTHO05D009199 4.6e-12 74.7 120 47.5
Oeu014281.1 Olea europaea HOM05D007433 ORTHO05D009199 4.6e-12 74.7 93 53.8
Ciclev10002882m.g Citrus clementina HOM05D007433 ORTHO05D009199 6.1e-12 74.3 115 45.2
Sc02g0008080 Simmondsia chinensis HOM05D007433 ORTHO05D009199 6.1e-12 74.3 108 44.4
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 7.9e-12 73.9 111 45.9
Gohir.A06G025100 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.0e-11 73.6 114 44.7
HanXRQChr10g0295351 Helianthus annuus HOM05D007433 ORTHO05D009199 1.0e-11 73.6 106 50.0
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 1.4e-11 73.2 80 56.2
Cc10_g07560 Coffea canephora HOM05D007433 ORTHO05D009199 1.8e-11 72.8 116 43.1
Aqoxy6G02471 Aquilegia oxysepala HOM05D007433 ORTHO05D009199 2.3e-11 72.4 112 47.3
Migut.C00395 Erythranthe guttata HOM05D007433 ORTHO05D009199 2.3e-11 72.4 102 52.0
SalBow7G1382 Salvia bowleyana HOM05D007433 ORTHO05D009199 6.7e-11 70.9 79 57.0
EL10Ac1g02355 Beta vulgaris HOM05D007433 ORTHO05D009199 8.8e-11 70.5 119 44.5
CsaV3_4G035230 Cucumis sativus L. HOM05D007433 ORTHO05D009199 2.5e-10 68.9 56 62.5
TAR381G0154 Trochodendron aralioides HOM05D007433 ORTHO05D009199 3.3e-10 68.6 113 44.2
Atru.chr13.863 Acer truncatum HOM05D007433 ORTHO05D009199 5.7e-10 67.8 76 50.0
Phvul.011G135200 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 8.2e-09 63.9 85 50.6


User provided reference genes

Program Settings