Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 5.0e-120 434.5 226 100.0
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 9.5e-103 377.1 225 88.0
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 2.6e-100 369.0 224 85.7
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 1.4e-98 363.2 222 87.4
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 3.1e-93 345.5 225 75.1
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 2.6e-92 342.4 221 76.0
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 7.1e-90 334.3 224 73.2
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 1.6e-89 333.2 215 74.9
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 4.6e-89 331.6 227 77.5
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 7.8e-89 330.9 227 78.0
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 1.7e-88 329.7 225 73.8
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 3.0e-88 328.9 215 74.0
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 8.6e-88 327.4 222 71.6
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 4.3e-87 325.1 215 73.5
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 5.6e-87 324.7 218 73.4
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 5.8e-84 314.7 213 70.0
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 2.2e-83 312.8 215 69.3
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 2.9e-83 312.4 212 72.6
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 1.9e-82 309.7 212 75.5
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 7.1e-82 307.8 212 76.4
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 2.7e-81 305.8 215 73.5
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 7.8e-81 304.3 213 74.6
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 1.7e-80 303.1 217 68.2
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 3.0e-80 302.4 227 66.5
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 3.9e-80 302.0 218 71.6
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 5.1e-80 301.6 212 70.3
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 5.1e-80 301.6 217 72.4
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 2.5e-79 299.3 213 73.7
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 4.3e-79 298.5 214 68.2
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 5.6e-79 298.1 211 74.4
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 7.3e-79 297.7 213 74.2
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 9.6e-79 297.4 208 70.7
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 3.6e-78 295.4 216 66.7
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 4.8e-78 295.0 228 66.7
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 8.1e-78 294.3 212 66.5
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.5e-76 290.0 212 67.9
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.5e-76 290.0 212 67.9
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 1.5e-76 290.0 215 68.8
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 2.0e-76 289.7 214 67.8
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 3.4e-76 288.9 219 66.2
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.4e-76 288.9 212 67.9
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 9.9e-76 287.3 212 65.6
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 1.3e-75 287.0 213 66.7
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.3e-75 287.0 211 69.2
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 2.9e-75 285.8 219 67.6
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 4.9e-75 285.0 216 65.3
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 8.4e-75 284.3 217 65.4
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 1.1e-74 283.9 213 66.2
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 1.4e-74 283.5 211 66.8
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 4.2e-74 282.0 218 64.7
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 4.2e-74 282.0 220 62.7
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 6.0e-73 278.1 219 65.8
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 6.0e-73 278.1 214 65.0
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 7.9e-73 277.7 218 63.3
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 1.7e-72 276.6 215 67.4
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 2.3e-72 276.2 211 69.7
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 5.1e-72 275.0 212 69.8
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 6.6e-72 274.6 212 69.8
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 1.1e-71 273.9 212 64.6
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 1.5e-71 273.5 212 69.3
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 1.9e-71 273.1 221 67.4
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 2.5e-71 272.7 224 64.3
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 4.3e-71 271.9 241 61.0
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 5.6e-71 271.6 218 69.7
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 7.3e-71 271.2 224 64.3
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 1.3e-70 270.4 213 64.3
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 1.3e-70 270.4 220 61.8
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 2.8e-70 269.2 231 60.2
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 1.4e-69 266.9 221 65.2
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 1.8e-69 266.5 224 62.1
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 1.8e-69 266.5 218 67.0
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 1.8e-69 266.5 216 66.2
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 1.8e-69 266.5 213 62.4
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 3.1e-69 265.8 215 65.1
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 5.3e-69 265.0 232 59.9
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 5.3e-69 265.0 214 66.8
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 5.8e-68 261.5 214 64.0
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 6.4e-67 258.1 212 61.3
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 6.4e-67 258.1 198 63.6
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 6.4e-67 258.1 198 63.6
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 8.4e-67 257.7 212 61.3
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 1.1e-66 257.3 222 66.2
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 2.4e-66 256.1 212 60.8
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 2.4e-66 256.1 215 60.5
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.4e-66 256.1 207 60.9
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 3.2e-66 255.8 236 57.6
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 5.5e-66 255.0 189 64.0
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 7.1e-66 254.6 217 61.3
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 7.1e-66 254.6 220 60.9
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 9.3e-66 254.2 198 62.6
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 9.3e-66 254.2 322 45.7
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 1.2e-65 253.8 215 60.5
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 4.6e-65 251.9 217 60.8
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 7.9e-65 251.1 225 61.3
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 1.0e-64 250.8 222 64.0
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 1.3e-64 250.4 224 58.9
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 2.3e-64 249.6 227 63.4
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 3.0e-64 249.2 220 61.4
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 3.0e-64 249.2 278 54.3
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 6.7e-64 248.1 187 64.7
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 6.7e-64 248.1 171 68.4
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 6.7e-64 248.1 224 58.5
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 8.7e-64 247.7 230 58.3
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 1.3e-62 243.8 229 57.2
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 1.6e-62 243.4 213 57.3
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 6.2e-62 241.5 252 53.6
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.4e-61 240.4 168 76.2
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 2.4e-61 239.6 217 56.7
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 2.4e-61 239.6 212 57.1
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 1.2e-60 237.3 210 57.1
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 1.5e-60 236.9 231 56.3
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 1.5e-60 236.9 168 70.8
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 3.8e-59 232.3 218 61.0
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 1.9e-58 229.9 222 54.5
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 3.0e-56 222.6 210 52.4
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 6.7e-56 221.5 130 80.0
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 1.5e-55 220.3 175 65.7
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 1.3e-54 217.2 171 63.7
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 3.7e-54 215.7 128 79.7
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 3.1e-53 212.6 170 67.1
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 5.0e-51 205.3 206 54.9
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 3.2e-50 202.6 146 67.1
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 9.3e-50 201.1 211 51.2
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 3.5e-49 199.1 172 57.6
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 1.0e-48 197.6 127 74.0
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.1e-47 194.1 217 49.8
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 4.3e-47 192.2 200 48.0
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 5.7e-47 191.8 373 37.3
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.7e-43 180.3 193 54.4
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 3.8e-43 179.1 168 56.5
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 2.5e-42 176.4 161 55.9
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 2.5e-42 176.4 161 55.9
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 2.5e-42 176.4 161 55.9
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 4.2e-42 175.6 178 53.4
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.5e-39 166.4 171 60.8
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 1.4e-37 160.6 197 55.8
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 5.0e-19 99.0 120 50.8
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 5.0e-19 99.0 59 78.0
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 1.2e-17 94.4 99 53.5
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 1.0e-16 91.3 189 34.4
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 6.8e-16 88.6 72 55.6
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 3.4e-15 86.3 231 31.6
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 6.3e-14 82.0 219 29.7
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 7.0e-13 78.6 170 34.7
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 3.5e-12 76.3 55 67.3
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 1.0e-11 74.7 62 54.8
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 1.0e-11 74.7 255 27.1
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 8.5e-11 71.6 44 75.0
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 9.4e-10 68.2 45 73.3
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 2.7e-09 66.6 69 47.8
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 4.7e-09 65.9 202 29.2
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 8.8e-08 61.6 80 55.0
MCO08G161 Micromonas commoda HOM05D000175 ORTHO05D000481 6.3e-06 55.5 61 45.9
SEGI_07437 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 8.3e-06 55.1 84 36.9


User provided reference genes

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