Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 8.8e-137 490.3 259 100.0
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 1.1e-99 367.1 257 77.8
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.2e-98 363.6 256 74.6
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 8.1e-98 360.9 256 74.2
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 3.9e-92 342.0 259 72.6
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 9.3e-86 320.9 284 65.5
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 9.6e-83 310.8 259 66.8
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 4.0e-81 305.4 259 66.4
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 2.6e-80 302.8 259 65.6
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 2.2e-71 273.1 260 62.7
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 5.5e-70 268.5 257 58.4
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 1.2e-69 267.3 264 59.5
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 6.0e-69 265.0 267 59.9
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.8e-68 263.5 262 58.0
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 5.6e-67 258.5 267 58.8
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 5.6e-67 258.5 257 57.6
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 2.4e-65 253.1 254 61.4
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 4.0e-65 252.3 256 57.8
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 4.0e-65 252.3 259 56.4
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 6.9e-65 251.5 257 56.0
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 9.0e-65 251.1 261 54.8
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 1.5e-64 250.4 256 56.2
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 1.5e-64 250.4 259 55.6
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.3e-63 247.3 263 53.2
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 2.9e-63 246.1 258 53.9
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 2.9e-63 246.1 265 57.0
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.2e-61 240.7 264 54.9
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 2.7e-61 239.6 260 55.0
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 3.5e-61 239.2 265 51.7
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 5.1e-60 235.3 258 54.7
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 5.7e-59 231.9 257 52.1
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 1.6e-58 230.3 252 55.6
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 3.7e-58 229.2 252 53.2
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 5.3e-57 225.3 261 54.4
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 1.2e-56 224.2 319 45.5
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 1.2e-56 224.2 263 52.1
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 1.5e-56 223.8 260 51.2
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.5e-56 222.2 267 52.1
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 4.5e-56 222.2 259 51.7
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.7e-55 220.3 267 51.7
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.7e-55 220.3 268 52.6
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 3.8e-55 219.2 260 51.9
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 8.5e-55 218.0 269 50.2
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 1.4e-54 217.2 256 51.2
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 1.4e-54 217.2 136 79.4
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 1.9e-54 216.9 265 49.8
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 3.2e-54 216.1 260 51.2
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.2e-54 215.7 256 53.9
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.2e-54 215.7 252 50.8
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 5.5e-54 215.3 264 51.1
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 9.4e-54 214.5 252 50.4
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.2e-53 214.2 264 50.0
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.1e-53 213.4 278 51.1
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 4.6e-53 212.2 251 54.2
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.4e-52 210.7 261 52.5
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 2.3e-52 209.9 257 48.6
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 2.3e-52 209.9 246 49.6
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 2.3e-52 209.9 252 50.4
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 2.3e-52 209.9 256 49.2
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.1e-51 207.6 245 50.6
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 2.0e-51 206.8 268 50.7
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 2.0e-51 206.8 269 49.4
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 3.3e-51 206.1 261 49.0
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 4.3e-51 205.7 257 48.2
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 5.7e-51 205.3 245 50.2
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 1.3e-50 204.1 253 48.6
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 1.3e-50 204.1 253 48.6
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 1.7e-50 203.8 213 55.9
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 2.2e-50 203.4 257 47.5
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 3.7e-50 202.6 250 50.0
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 4.8e-50 202.2 245 49.8
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 4.8e-50 202.2 256 47.7
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 1.4e-49 200.7 265 47.9
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 1.4e-49 200.7 265 47.9
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 5.3e-49 198.7 253 50.6
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 9.1e-49 198.0 179 57.0
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 9.1e-49 198.0 177 57.6
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 1.2e-48 197.6 248 48.8
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.5e-48 197.2 265 46.4
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.0e-48 196.8 266 48.5
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.0e-48 196.8 198 56.1
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 2.0e-48 196.8 238 48.3
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 3.4e-48 196.1 250 48.8
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 3.4e-48 196.1 252 44.8
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 5.9e-48 195.3 264 46.6
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 7.7e-48 194.9 257 47.1
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 2.2e-47 193.4 265 47.2
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 2.2e-47 193.4 250 50.4
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 6.5e-47 191.8 249 46.2
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 1.4e-46 190.7 270 47.0
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.9e-46 190.3 259 47.5
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 2.5e-46 189.9 190 57.9
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 7.2e-46 188.3 250 48.8
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 1.2e-45 187.6 252 47.6
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 1.2e-45 187.6 257 45.1
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 1.2e-45 187.6 246 49.6
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 2.1e-45 186.8 257 45.9
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 6.1e-45 185.3 256 46.5
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 1.0e-44 184.5 282 43.6
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 1.4e-44 184.1 251 45.4
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 2.3e-44 183.3 257 45.9
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 3.9e-44 182.6 258 46.9
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 3.9e-44 182.6 174 58.0
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 3.3e-43 179.5 257 44.0
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 3.3e-43 179.5 285 42.1
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 1.3e-42 177.6 267 41.9
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.7e-42 177.2 250 46.0
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.7e-42 177.2 163 55.8
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 6.3e-42 175.3 258 42.2
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 4.1e-41 172.6 251 46.6
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 9.1e-41 171.4 371 36.9
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 2.6e-40 169.9 246 42.7
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 3.5e-40 169.5 248 41.9
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 1.0e-39 167.9 256 42.6
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 5.0e-39 165.6 174 47.7
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.4e-38 164.1 257 45.5
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 1.9e-38 163.7 270 42.2
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 3.2e-38 162.9 275 41.8
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.2e-37 161.0 261 44.4
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.4e-36 157.5 242 41.3
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 8.8e-36 154.8 275 39.3
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 3.3e-35 152.9 263 41.1
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 3.3e-35 152.9 204 45.6
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 2.4e-33 146.7 152 50.7
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 1.2e-32 144.4 148 52.7
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.2e-32 144.4 367 33.2
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 1.2e-29 134.4 155 52.3
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 1.8e-28 130.6 131 64.1
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 1.7e-26 124.0 142 51.4
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 1.7e-26 124.0 184 40.2
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 1.2e-24 117.9 246 39.8
Medtr3g104160 Medicago truncatula HOM05D004579 ORTHO05D005376 1.0e-23 114.8 85 78.8
Medtr3g104200 Medicago truncatula HOM05D004579 ORTHO05D005376 5.0e-23 112.5 89 74.2
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 5.0e-23 112.5 255 33.3
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 8.5e-23 111.7 125 56.0
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.1e-22 111.3 164 44.5
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 9.4e-22 108.2 137 42.3
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.8e-20 104.0 248 35.5
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 6.8e-20 102.1 71 69.0
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 1.4e-17 94.4 91 51.6
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.6e-16 90.9 126 47.6
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 1.7e-15 87.4 211 31.8
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 2.3e-15 87.0 145 37.9
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 8.6e-15 85.1 163 33.1
arahy.Tifrunner.gnm1.ann1.LJH7P1 Arachis hypogaea HOM05D004579 ORTHO05D005376 2.3e-12 77.0 122 43.4
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 4.0e-12 76.3 213 35.7
arahy.Tifrunner.gnm1.ann1.FCA0JR Arachis hypogaea HOM05D004579 ORTHO05D005376 9.8e-11 71.6 92 47.8
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.7e-10 70.9 59 57.6
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 3.9e-07 59.7 225 30.7
QL03p011519 Quercus lobata HOM05D004579 ORTHO05D005376 5.0e-07 59.3 90 47.8
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 1.5e-06 57.8 86 45.3
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 1.5e-06 57.8 86 45.3
MCO09G383 Micromonas commoda HOM05D004579 ORTHO05D005376 5.6e-06 55.8 109 33.9


User provided reference genes

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