Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15869_v3 Cicer arietinum L. HOM05D005447 ORTHO05D006730 1.6e-146 522.7 265 100.0
Medtr3g081440 Medicago truncatula HOM05D005447 ORTHO05D006730 1.5e-123 446.4 264 84.8
Psat5g036560 Pisum sativum HOM05D005447 ORTHO05D006730 1.7e-122 443.0 268 83.6
VMungo1309G1567 Vigna mungo HOM05D005447 ORTHO05D006730 4.8e-122 441.4 265 78.5
Phvul.009G076500 Phaseolus vulgaris HOM05D005447 ORTHO05D006730 6.3e-122 441.0 265 79.2
Glyma.06G051000 Glycine max HOM05D005447 ORTHO05D006730 1.1e-121 440.3 268 81.3
arahy.Tifrunner.gnm1.ann1.H6GXLW Arachis hypogaea HOM05D005447 ORTHO05D006730 4.1e-121 438.3 266 82.0
arahy.Tifrunner.gnm1.ann1.PT16FZ Arachis hypogaea HOM05D005447 ORTHO05D006730 1.2e-120 436.8 266 81.6
Lj1g0020487 Lotus japonicus HOM05D005447 ORTHO05D006730 1.2e-120 436.8 261 83.5
Psat5g106840 Pisum sativum HOM05D005447 ORTHO05D006730 9.4e-118 427.2 264 80.3
Lalb_Chr08g0245101 Lupinus albus HOM05D005447 ORTHO05D006730 1.1e-115 420.2 268 77.6
Cfa017935 Carpinus fangiana HOM05D005447 ORTHO05D006730 4.4e-107 391.7 256 75.0
Cpa.g.sc7.194 Carica papaya HOM05D005447 ORTHO05D006730 1.6e-104 383.3 260 72.3
Prupe.1G414700 Prunus persica HOM05D005447 ORTHO05D006730 1.7e-103 379.8 262 71.8
CiPaw.16G030000 Carya illinoinensis HOM05D005447 ORTHO05D006730 7.2e-102 374.4 265 69.8
RcHm_v2.0_Chr6g0310521 Rosa chinensis HOM05D005447 ORTHO05D006730 7.2e-102 374.4 265 69.4
Ciclev10009241m.g Citrus clementina HOM05D005447 ORTHO05D006730 1.2e-101 373.6 263 68.8
MD08G1073300 Malus domestica HOM05D005447 ORTHO05D006730 2.1e-101 372.9 263 70.0
TWI34G1470 Tripterygium wilfordii HOM05D005447 ORTHO05D006730 6.1e-101 371.3 265 70.9
Dinv27967 Davidia involucrata HOM05D005447 ORTHO05D006730 8.0e-101 370.9 262 68.7
QL02p001555 Quercus lobata HOM05D005447 ORTHO05D006730 5.2e-100 368.2 261 69.3
Atru.chr7.2018 Acer truncatum HOM05D005447 ORTHO05D006730 2.0e-99 366.3 256 71.5
Prupe.6G150100 Prunus persica HOM05D005447 ORTHO05D006730 4.4e-99 365.2 265 67.5
Eucgr.C03005 Eucalyptus grandis HOM05D005447 ORTHO05D006730 1.7e-98 363.2 265 66.8
Actinidia30302 Actinidia chinensis HOM05D005447 ORTHO05D006730 4.8e-98 361.7 249 71.5
CANSAT25G3707 Cannabis sativa HOM05D005447 ORTHO05D006730 6.3e-98 361.3 267 67.8
vmacro00161 Vaccinium macrocarpon HOM05D005447 ORTHO05D006730 6.3e-98 361.3 287 64.5
CSS0008615 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 1.8e-97 359.8 263 68.4
Manes.16G078100 Manihot esculenta HOM05D005447 ORTHO05D006730 2.4e-97 359.4 266 68.8
PGSC0003DMG400029302 Solanum tuberosum HOM05D005447 ORTHO05D006730 4.1e-97 358.6 265 67.2
FvH4_2g32160 Fragaria vesca HOM05D005447 ORTHO05D006730 1.2e-96 357.1 265 66.4
EL10Ac2g03925 Beta vulgaris HOM05D005447 ORTHO05D006730 1.6e-96 356.7 265 66.4
FAN27G1388 Fragaria x ananassa HOM05D005447 ORTHO05D006730 1.6e-96 356.7 265 66.4
CSS0040006 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 5.9e-96 354.8 261 68.2
Potri.018G061800 Populus trichocarpa HOM05D005447 ORTHO05D006730 1.0e-95 354.0 267 66.7
Sabra18G0050000 Salix brachista HOM05D005447 ORTHO05D006730 1.3e-95 353.6 249 69.5
Sopen12g031820 Solanum pennellii HOM05D005447 ORTHO05D006730 1.3e-95 353.6 266 66.2
Thecc.09G051400 Theobroma cacao HOM05D005447 ORTHO05D006730 1.7e-95 353.2 264 70.5
Cc08_g10370 Coffea canephora HOM05D005447 ORTHO05D006730 2.9e-95 352.4 248 69.4
Peaxi162Scf00436g00831 Petunia axillaris HOM05D005447 ORTHO05D006730 3.8e-95 352.1 265 67.9
Gorai.009G046500 Gossypium raimondii HOM05D005447 ORTHO05D006730 8.6e-95 350.9 250 72.0
Gohir.A05G043700 Gossypium hirsutum HOM05D005447 ORTHO05D006730 1.1e-94 350.5 250 72.0
Solyc12g095920.2 Solanum lycopersicum HOM05D005447 ORTHO05D006730 1.1e-94 350.5 266 65.8
Duzib187G1160 Durio zibethinus HOM05D005447 ORTHO05D006730 1.5e-94 350.1 264 70.5
Sed0025565 Sechium edule HOM05D005447 ORTHO05D006730 1.5e-94 350.1 265 65.3
Gohir.D05G045300 Gossypium hirsutum HOM05D005447 ORTHO05D006730 1.9e-94 349.7 250 71.6
THA.LOC104803734 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 3.3e-94 349.0 239 69.9
Nn8g38949 Nelumbo nucifera HOM05D005447 ORTHO05D006730 7.2e-94 347.8 247 69.2
Nitab4.5_0000738g0170 Nicotiana tabacum HOM05D005447 ORTHO05D006730 1.6e-93 346.7 258 65.9
C07p59440 Brassica napus HOM05D005447 ORTHO05D006730 2.1e-93 346.3 254 66.1
BolC7t46387H Brassica oleracea HOM05D005447 ORTHO05D006730 2.1e-93 346.3 254 66.1
Lju3103C0G11 Lonicera japonica HOM05D005447 ORTHO05D006730 2.1e-93 346.3 289 61.2
Duzib168G1543 Durio zibethinus HOM05D005447 ORTHO05D006730 2.8e-93 345.9 263 70.0
Lsat_1_v5_gn_6_7400 Lactuca sativa HOM05D005447 ORTHO05D006730 3.6e-93 345.5 257 65.8
BraA03t15210Z Brassica rapa HOM05D005447 ORTHO05D006730 6.1e-93 344.7 254 66.1
Hma1.2p1_2708F.1_g327220 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 6.1e-93 344.7 267 66.3
Hma1.2p1_1213F.1_g267530 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 1.8e-92 343.2 267 65.9
A03p61720 Brassica napus HOM05D005447 ORTHO05D006730 3.0e-92 342.4 254 65.7
PGR044G0161 Punica granatum HOM05D005447 ORTHO05D006730 6.8e-92 341.3 265 66.4
BcaNung02148 Brassica carinata HOM05D005447 ORTHO05D006730 8.9e-92 340.9 254 65.7
Aa31sc248G10 Aethionema arabicum HOM05D005447 ORTHO05D006730 1.5e-91 340.1 254 65.7
Thhalv10025994m.g Eutrema salsugineum HOM05D005447 ORTHO05D006730 1.5e-91 340.1 254 65.4
Hma1.2p1_1944F.1_g308590 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 1.5e-91 340.1 248 69.0
Sp7g30740 Schrenkiella parvula HOM05D005447 ORTHO05D006730 1.5e-91 340.1 254 66.1
Peaxi162Scf00064g01636 Petunia axillaris HOM05D005447 ORTHO05D006730 2.0e-91 339.7 248 66.9
MELO3C016858.2 Cucumis melo HOM05D005447 ORTHO05D006730 4.4e-91 338.6 265 62.6
HanXRQChr09g0251181 Helianthus annuus HOM05D005447 ORTHO05D006730 4.4e-91 338.6 264 64.4
Hma1.2p1_0482F.1_g162683 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 7.5e-91 337.8 240 69.6
CARHR240980 Cardamine hirsuta HOM05D005447 ORTHO05D006730 2.2e-90 336.3 261 62.8
TAR626G0638 Trochodendron aralioides HOM05D005447 ORTHO05D006730 2.2e-90 336.3 247 66.8
CsaV3_4G035510 Cucumis sativus L. HOM05D005447 ORTHO05D006730 1.1e-89 334.0 265 61.9
Carub.0007s0752 Capsella rubella HOM05D005447 ORTHO05D006730 1.4e-89 333.6 254 65.4
Aqoxy6G02809 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 5.4e-89 331.6 264 62.9
AL7G18730 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 1.2e-88 330.5 236 66.5
AT4G32960 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 2.7e-88 329.3 254 63.4
AUR62022047 Chenopodium quinoa HOM05D005447 ORTHO05D006730 3.5e-88 328.9 259 64.9
PSO832G2924 Papaver somniferum HOM05D005447 ORTHO05D006730 3.5e-88 328.9 257 65.0
ECA233G2666 Erigeron canadensis HOM05D005447 ORTHO05D006730 4.5e-88 328.6 272 62.9
COL.COLO4_21030 Corchorus olitorius HOM05D005447 ORTHO05D006730 5.9e-88 328.2 263 66.5
PSO063G2264 Papaver somniferum HOM05D005447 ORTHO05D006730 1.0e-87 327.4 257 65.0
Aqoxy7G03929 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 2.9e-87 325.9 265 62.6
Hund03355 Selenicereus undatus HOM05D005447 ORTHO05D006730 2.9e-87 325.9 245 63.7
Sc06g0000920 Simmondsia chinensis HOM05D005447 ORTHO05D006730 3.9e-87 325.5 242 65.3
Nitab4.5_0011306g0050 Nicotiana tabacum HOM05D005447 ORTHO05D006730 8.6e-87 324.3 271 60.9
MSTRG.11670 Avicennia marina HOM05D005447 ORTHO05D006730 1.1e-86 323.9 260 63.1
Migut.A00152 Erythranthe guttata HOM05D005447 ORTHO05D006730 5.6e-86 321.6 258 64.0
SalBow4G2766 Salvia bowleyana HOM05D005447 ORTHO05D006730 9.5e-86 320.9 247 62.3
SGA_v2.0_scaffold1040G53805 Striga asiatica HOM05D005447 ORTHO05D006730 5.2e-84 315.1 237 64.1
unitig_748.g8015 Utricularia gibba HOM05D005447 ORTHO05D006730 8.9e-84 314.3 245 62.4
HPP92_026778 Vanilla planifolia HOM05D005447 ORTHO05D006730 2.9e-82 309.3 241 61.4
DCAR_004444 Daucus carota HOM05D005447 ORTHO05D006730 1.4e-81 307.0 252 59.9
ATR0789G081 Amborella trichopoda HOM05D005447 ORTHO05D006730 1.6e-80 303.5 264 59.5
DCAR_004445 Daucus carota HOM05D005447 ORTHO05D006730 6.6e-79 298.1 258 56.2
Lj7C280G4 Lonicera japonica HOM05D005447 ORTHO05D006730 8.6e-79 297.7 289 55.4
AUR62009180 Chenopodium quinoa HOM05D005447 ORTHO05D006730 2.1e-77 293.1 224 66.1
THA.LOC104818575 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 6.8e-76 288.1 227 63.0
CARHR240970 Cardamine hirsuta HOM05D005447 ORTHO05D006730 4.4e-75 285.4 244 58.6
Os06g0150100 Oryza sativa ssp. japonica HOM05D005447 ORTHO05D006730 7.5e-75 284.6 281 50.5
Carub.0007s0751 Capsella rubella HOM05D005447 ORTHO05D006730 1.4e-73 280.4 231 60.6
AL7G18720 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 1.3e-71 273.9 231 59.7
AT4G32970 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 1.7e-71 273.5 243 57.2
Zm00001eb270840 Zea mays HOM05D005447 ORTHO05D006730 3.9e-71 272.3 274 51.5
Haze_18213 Corylus avellana HOM05D005447 ORTHO05D006730 1.9e-70 270.0 172 75.6
Ah.11g044670 Amaranthus hybridus HOM05D005447 ORTHO05D006730 2.0e-67 260.0 265 51.7
SEGI_08476 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 5.4e-65 251.9 217 58.1
AUR62022045 Chenopodium quinoa HOM05D005447 ORTHO05D006730 3.5e-64 249.2 172 69.2
Pp3c6_24590 Physcomitrium patens HOM05D005447 ORTHO05D006730 2.5e-62 243.0 253 51.0
Nitab4.5_0001179g0010 Nicotiana tabacum HOM05D005447 ORTHO05D006730 4.3e-62 242.3 196 62.2
Oeu057690.3 Olea europaea HOM05D005447 ORTHO05D006730 1.4e-60 237.3 172 68.6
CDE04G0748 Ceratophyllum demersum HOM05D005447 ORTHO05D006730 2.0e-59 233.4 171 65.5
FAN15G0839 Fragaria x ananassa HOM05D005447 ORTHO05D006730 1.3e-58 230.7 152 71.1
ClCG05G017740 Citrullus lanatus HOM05D005447 ORTHO05D006730 8.4e-58 228.0 172 62.8
Mapoly0129s0035 Marchantia polymorpha HOM05D005447 ORTHO05D006730 1.5e-54 217.2 232 46.6
CBR_g6395 Chara braunii HOM05D005447 ORTHO05D006730 3.1e-52 209.5 238 46.2
Eucgr.C03947 Eucalyptus grandis HOM05D005447 ORTHO05D006730 3.9e-47 192.6 151 65.6
Nitab4.5_0000359g0050 Nicotiana tabacum HOM05D006502 ORTHO05D006730 1.1e-44 184.5 119 72.3
SMO367G0921 Selaginella moellendorffii HOM05D005447 ORTHO05D006730 5.8e-43 178.7 218 42.7
Oeu036349.1 Olea europaea HOM05D005447 ORTHO05D006730 1.4e-41 174.1 128 67.2
AUR62009181 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.9e-41 173.7 136 66.2
FAN24G0255 Fragaria x ananassa HOM05D005447 ORTHO05D006730 1.9e-41 173.7 147 61.9
AagrBONN_evm.TU.Sc2ySwM_344.4531 Anthoceros agrestis HOM05D005447 ORTHO05D006730 2.4e-41 173.3 187 48.7
VMungo0251G2120 Vigna mungo HOM05D005447 ORTHO05D006730 7.1e-41 171.8 134 58.2
FAN20G2744 Fragaria x ananassa HOM05D005447 ORTHO05D006730 6.0e-40 168.7 147 59.9
TPR.G36227 Trifolium pratense HOM05D005447 ORTHO05D006730 6.9e-36 155.2 93 81.7
MSTRG.25940 Avicennia marina HOM05D005447 ORTHO05D006730 4.5e-35 152.5 109 67.0
VMungo0540G0355 Vigna mungo HOM05D005447 ORTHO05D006730 4.9e-34 149.1 110 63.6
SEGI_23140 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 1.1e-25 121.3 147 46.3
Actinidia01202 Actinidia chinensis HOM05D005447 ORTHO05D006730 1.4e-25 120.9 100 60.0
C01p05700 Brassica napus HOM05D005447 ORTHO05D006730 4.6e-24 115.9 92 63.0
BolC1t00551H Brassica oleracea HOM05D005447 ORTHO05D006730 4.6e-24 115.9 92 63.0
AUR62025497 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.0e-23 114.8 85 67.1
GSVIVG01035346001 Vitis vinifera HOM05D005447 ORTHO05D006730 4.3e-22 109.4 89 62.9
SHI18783 Sapria himalayana HOM05D005447 ORTHO05D006730 2.0e-19 100.5 76 61.8
AUR62022046 Chenopodium quinoa HOM05D005447 ORTHO05D006730 6.5e-18 95.5 247 30.8
Cre13.g604850 Chlamydomonas reinhardtii HOM05D005447 ORTHO05D006730 3.0e-15 86.7 231 32.5
Gohir.D06G091250 Gossypium hirsutum HOM05D005447 ORTHO05D006730 4.7e-08 62.8 80 42.5
Gohir.D06G091325 Gossypium hirsutum HOM05D005447 ORTHO05D006730 4.7e-08 62.8 80 42.5
Gorai.010G105200 Gossypium raimondii HOM05D005447 ORTHO05D006730 1.0e-07 61.6 80 42.5


User provided reference genes

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