Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 4.6e-217 757.7 406 100.0
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 7.1e-149 531.2 390 75.9
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 4.9e-142 508.4 409 70.9
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 1.3e-139 500.4 409 72.1
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.2e-127 460.7 408 69.4
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 9.9e-127 457.6 391 68.3
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 7.1e-125 451.4 409 65.0
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 2.3e-123 446.4 400 69.8
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 7.2e-109 398.3 395 66.6
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 3.3e-106 389.4 383 60.1
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 9.7e-98 361.3 412 54.1
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 1.2e-95 354.4 417 52.5
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 5.9e-95 352.1 416 56.2
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 1.6e-92 344.0 423 53.4
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 3.6e-92 342.8 422 53.1
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 3.6e-92 342.8 422 54.7
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 1.4e-91 340.9 418 52.6
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 3.9e-91 339.3 418 52.6
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 8.8e-91 338.2 420 54.5
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 3.3e-90 336.3 424 54.0
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 2.8e-89 333.2 419 54.2
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 3.7e-89 332.8 414 53.1
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 3.1e-88 329.7 414 52.4
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 4.5e-87 325.9 447 55.3
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 2.9e-86 323.2 431 49.7
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 1.9e-85 320.5 427 53.2
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 2.1e-84 317.0 418 52.6
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 3.0e-83 313.2 427 50.6
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 6.7e-83 312.0 435 50.3
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 5.7e-82 308.9 419 50.4
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 3.7e-81 306.2 384 53.6
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 1.2e-79 301.2 397 56.2
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 7.7e-79 298.5 430 50.0
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 1.0e-78 298.1 428 48.6
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 5.0e-78 295.8 423 46.8
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 5.0e-78 295.8 380 52.4
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 1.5e-77 294.3 412 45.6
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.9e-77 293.9 428 48.1
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 2.5e-77 293.5 428 47.9
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 1.2e-76 291.2 400 52.5
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 1.4e-75 287.7 428 47.9
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 6.8e-75 285.4 419 46.5
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 4.5e-71 272.7 418 47.6
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 1.0e-70 271.6 420 46.9
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 1.7e-70 270.8 426 48.1
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 5.0e-70 269.2 419 45.1
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 3.3e-69 266.5 419 44.6
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 5.5e-69 265.8 411 44.5
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 4.7e-68 262.7 401 46.6
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 6.1e-68 262.3 398 47.7
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 6.8e-67 258.8 424 47.6
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 1.2e-66 258.1 407 42.8
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 6.3e-65 252.3 415 43.9
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 2.4e-64 250.4 358 49.4
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 5.9e-63 245.7 413 41.4
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 7.8e-63 245.4 463 44.7
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 8.6e-62 241.9 419 43.9
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 2.0e-58 230.7 324 47.5
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 1.3e-57 228.0 350 43.1
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 7.0e-56 222.2 302 50.7
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 4.6e-55 219.5 401 39.9
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 1.7e-54 217.6 418 43.3
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 3.0e-54 216.9 362 44.5
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 8.6e-54 215.3 386 40.4
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 2.8e-52 210.3 424 40.6
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 1.8e-51 207.6 465 39.8
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 6.8e-51 205.7 420 42.1
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 1.2e-50 204.9 464 39.9
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 4.4e-50 203.0 450 37.8
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 3.2e-48 196.8 416 38.7
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 4.1e-48 196.4 316 44.3
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 6.0e-47 192.6 303 44.6
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 5.6e-45 186.0 416 38.5
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.5e-42 177.9 422 34.8
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 3.4e-42 176.8 413 36.3
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 2.2e-41 174.1 384 38.3
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 3.7e-41 173.3 419 34.6
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 2.4e-40 170.6 356 43.8
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 4.1e-40 169.9 392 38.0
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 2.3e-38 164.1 420 38.6
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 5.1e-38 162.9 425 32.5
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 1.1e-37 161.8 404 37.4
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 7.3e-37 159.1 398 37.2
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 2.1e-36 157.5 214 45.3
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 6.2e-36 156.0 399 36.1
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.4e-35 154.1 367 32.7
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 3.1e-35 153.7 166 53.0
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 3.1e-35 153.7 105 66.7
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 8.9e-35 152.1 412 38.6
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 4.4e-34 149.8 422 33.4
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.3e-33 148.3 299 35.1
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 1.7e-33 147.9 464 31.0
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 3.8e-33 146.7 417 31.9
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 7.8e-31 139.0 345 34.8
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 1.0e-30 138.7 423 32.2
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 1.0e-30 138.7 339 35.7
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 1.7e-30 137.9 466 33.7
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 3.0e-30 137.1 391 37.1
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 6.9e-27 125.9 396 30.1
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 6.9e-27 125.9 327 34.3
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 7.6e-26 122.5 396 29.8
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 1.3e-25 121.7 114 52.6
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 2.4e-24 117.5 128 51.6
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 7.1e-24 115.9 339 33.9
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 1.0e-22 112.1 353 30.0
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 5.1e-22 109.8 122 59.0
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 3.3e-21 107.1 316 30.1
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.6e-20 104.8 177 42.4
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 3.6e-20 103.6 325 34.8
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 1.8e-19 101.3 123 56.9
MELO3C016931.2 Cucumis melo HOM05D005213 ORTHO05D006229 3.1e-19 100.5 353 32.6
CsaV3_4G036220 Cucumis sativus L. HOM05D005213 ORTHO05D006229 3.4e-18 97.1 352 31.8
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 1.3e-17 95.1 346 29.5
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 1.3e-17 95.1 346 29.5
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 1.7e-17 94.7 344 34.3
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 1.7e-17 94.7 345 30.4
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 1.7e-17 94.7 345 30.4
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 8.4e-17 92.4 337 32.6
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 1.4e-16 91.7 343 35.3
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 1.9e-16 91.3 342 32.5
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 1.9e-16 91.3 342 32.5
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 2.4e-16 90.9 342 32.5
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 4.2e-16 90.1 344 28.5
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 4.2e-16 90.1 343 35.0
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 3.5e-15 87.0 347 34.9
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 6.0e-15 86.3 342 31.3
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 7.9e-15 85.9 344 32.0
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 1.0e-14 85.5 186 37.6
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 1.3e-14 85.1 341 34.9
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 1.3e-14 85.1 341 34.9
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 1.8e-14 84.7 340 34.7
ClCG05G015950 Citrullus lanatus HOM05D005213 ORTHO05D006229 1.8e-14 84.7 323 32.2
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 6.7e-14 82.8 343 30.9
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 1.5e-13 81.6 325 29.2
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 1.5e-13 81.6 345 28.7
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 1.5e-13 81.6 337 27.0
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 7.4e-13 79.3 164 37.8
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.3e-12 78.6 321 27.1
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 1.3e-12 78.6 403 25.8
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 3.7e-12 77.0 50 80.0
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 4.8e-12 76.6 114 46.5
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 1.5e-10 71.6 343 32.7
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 2.6e-10 70.9 353 28.0
SEGI_40729 Sequoiadendron giganteum HOM05D005213 ORTHO05D006229 5.8e-10 69.7 390 24.4
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 6.5e-09 66.2 333 28.5
HPP92_004172 Vanilla planifolia HOM05D001722 ORTHO05D001910 5.5e-08 63.2 72 37.5


User provided reference genes

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