Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 1.3e-187 661.4 824 100.0
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 1.1e-135 488.8 825 88.7
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 1.8e-133 481.5 825 89.3
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 5.7e-116 423.3 828 87.4
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 2.0e-105 388.3 829 85.5
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 1.5e-100 372.1 828 83.2
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 1.0e-96 359.4 826 83.4
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 2.0e-92 345.1 828 81.6
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 3.2e-90 337.8 809 83.2
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 1.7e-88 332.0 809 83.3
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 6.2e-78 297.0 823 80.4
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 9.9e-76 289.7 809 81.3
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 3.8e-67 261.2 256 60.2
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 2.8e-62 245.0 255 56.5
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 6.2e-62 243.8 251 52.6
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 8.1e-62 243.4 261 55.2
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 5.3e-61 240.7 827 76.9
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 6.9e-61 240.4 788 77.5
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 2.0e-60 238.8 266 53.0
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 5.8e-60 237.3 261 52.1
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 5.8e-60 237.3 260 51.2
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 9.9e-60 236.5 245 54.7
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 1.7e-59 235.7 151 75.5
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 1.7e-59 235.7 257 49.8
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 1.7e-59 235.7 260 53.1
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 2.2e-59 235.3 263 51.3
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 2.2e-59 235.3 257 49.8
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 3.8e-59 234.6 821 75.3
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 1.4e-58 232.6 263 51.7
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 9.3e-58 229.9 151 73.5
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 1.2e-57 229.6 243 49.8
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 4.6e-57 227.6 246 49.6
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 4.6e-57 227.6 256 48.0
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 1.0e-56 226.5 743 80.3
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.3e-56 226.1 743 80.2
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 1.3e-56 226.1 263 52.5
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 1.8e-56 225.7 260 46.9
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 2.3e-56 225.3 824 74.4
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 8.7e-56 223.4 763 79.0
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 1.9e-55 222.2 265 51.3
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.6e-55 220.7 261 51.0
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 7.4e-55 220.3 273 49.1
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 1.6e-54 219.2 181 61.3
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 4.8e-54 217.6 743 67.6
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 6.2e-54 217.2 252 50.8
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 1.8e-53 215.7 266 49.2
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 4.0e-53 214.5 254 48.8
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 5.3e-53 214.2 252 48.0
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 5.3e-53 214.2 176 62.5
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 5.3e-53 214.2 176 62.5
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 6.9e-53 213.8 174 64.4
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 9.0e-53 213.4 816 74.8
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 1.5e-52 212.6 199 57.3
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 2.0e-52 212.2 176 60.8
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 1.7e-51 209.1 258 46.5
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 4.9e-51 207.6 215 51.6
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 8.4e-51 206.8 825 74.2
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 5.5e-50 204.1 168 60.7
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 1.2e-49 203.0 208 53.4
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 2.1e-49 202.2 217 50.7
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.7e-49 201.8 181 59.7
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 7.9e-49 200.3 263 46.4
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 1.0e-48 199.9 215 52.1
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.0e-48 199.9 180 56.1
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 8.7e-48 196.8 172 58.1
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 8.7e-48 196.8 179 57.0
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 8.7e-48 196.8 269 47.2
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 1.1e-47 196.4 263 45.6
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 1.1e-47 196.4 264 45.5
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.9e-47 195.7 223 48.4
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.5e-47 195.3 158 62.7
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.5e-47 195.3 158 62.7
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 7.4e-47 193.7 252 47.6
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 4.8e-46 191.0 250 46.0
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 1.1e-45 189.9 827 73.5
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.8e-45 189.1 213 52.1
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 4.1e-45 188.0 250 44.4
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 5.9e-44 184.1 151 57.6
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.0e-43 183.3 168 54.2
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 1.0e-43 183.3 224 50.9
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.8e-43 181.4 211 49.3
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 1.9e-42 179.1 128 70.3
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 1.9e-42 179.1 215 49.3
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.5e-42 178.7 213 51.2
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.1e-41 174.1 180 53.3
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 1.8e-40 172.6 239 46.0
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 1.8e-40 172.6 207 47.8
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 3.0e-40 171.8 150 53.3
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 5.1e-40 171.0 126 69.0
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 1.5e-39 169.5 193 48.2
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 1.5e-39 169.5 197 48.7
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 2.8e-38 165.2 241 45.2
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 6.3e-38 164.1 232 44.8
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 6.3e-38 164.1 232 44.8
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 1.8e-37 162.5 120 70.0
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 2.4e-37 162.2 151 51.7
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 1.2e-36 159.8 148 50.0
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 5.9e-36 157.5 197 46.7
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 7.7e-36 157.1 221 43.9
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 1.3e-35 156.4 225 44.9
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 6.5e-35 154.1 227 44.5
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 6.5e-35 154.1 114 69.3
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 8.5e-35 153.7 230 45.7
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 1.4e-34 152.9 199 44.7
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 5.5e-34 151.0 218 46.3
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.7e-33 148.7 180 47.8
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.1e-33 147.5 136 56.6
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 2.3e-32 145.6 166 48.2
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 3.9e-32 144.8 222 43.7
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 8.8e-32 143.7 224 44.2
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 1.1e-31 143.3 166 47.6
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 4.4e-31 141.4 223 42.2
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 6.3e-30 137.5 136 52.9
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.4e-29 136.3 148 47.3
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 3.1e-29 135.2 149 45.6
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 5.9e-28 131.0 232 39.2
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 2.5e-26 125.6 187 41.2
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 2.5e-26 125.6 186 40.9
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 5.2e-24 117.9 199 39.2
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.1e-23 116.7 181 39.2
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 1.5e-23 116.3 130 43.8
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 4.4e-23 114.8 228 37.3
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.3e-22 113.2 198 36.9
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 6.3e-22 110.9 140 42.1
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.2e-20 106.7 110 47.3
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 5.9e-20 104.4 111 54.1
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 2.2e-19 102.4 142 39.4
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.2e-15 90.1 139 38.8
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 1.4e-13 83.2 121 43.0
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 8.0e-09 67.4 46 69.6
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 6.3e-06 57.8 168 26.2


User provided reference genes

Program Settings