Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 2.9e-117 425.2 218 100.0
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 9.5e-92 340.5 213 82.6
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 5.4e-87 324.7 213 78.4
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 2.1e-86 322.8 215 78.6
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 7.8e-78 294.3 207 73.9
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 9.6e-76 287.3 213 72.3
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 8.1e-75 284.3 213 71.4
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 4.3e-68 261.9 218 65.6
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 9.6e-68 260.8 201 68.7
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 1.4e-66 256.9 210 65.2
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 2.2e-64 249.6 198 65.7
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 6.4e-64 248.1 197 66.0
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 9.3e-63 244.2 197 67.0
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 9.3e-63 244.2 197 67.0
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 1.2e-62 243.8 202 62.9
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 2.1e-62 243.0 172 73.8
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 2.7e-62 242.7 203 62.1
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 4.6e-62 241.9 200 64.5
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 4.6e-62 241.9 200 64.0
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 6.0e-62 241.5 200 64.5
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 7.9e-62 241.1 196 64.8
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 1.3e-61 240.4 202 62.9
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 1.8e-61 240.0 192 66.1
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 3.0e-61 239.2 197 65.5
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 3.0e-61 239.2 200 63.5
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 6.7e-61 238.0 205 62.4
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 1.1e-60 237.3 199 62.8
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 1.5e-60 236.9 198 66.2
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 1.5e-60 236.9 200 63.5
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 1.9e-60 236.5 211 63.0
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 2.5e-60 236.1 199 62.3
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 5.6e-60 235.0 205 62.0
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 7.4e-60 234.6 205 62.0
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.6e-59 233.4 182 69.2
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 1.6e-59 233.4 200 63.0
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 2.1e-59 233.0 206 60.7
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 2.1e-59 233.0 199 61.8
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 2.8e-59 232.6 206 59.7
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 4.8e-59 231.9 199 62.8
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 6.2e-59 231.5 206 59.2
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 8.1e-59 231.1 202 61.4
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 1.8e-58 229.9 206 60.2
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 3.1e-58 229.2 198 62.6
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 4.0e-58 228.8 201 60.2
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 1.2e-57 227.3 201 58.7
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 1.5e-57 226.9 198 59.6
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 5.8e-57 224.9 203 55.7
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 7.6e-57 224.6 200 61.5
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 1.3e-56 223.8 208 59.6
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.7e-56 223.4 207 58.0
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 2.2e-56 223.0 205 58.5
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 2.9e-56 222.6 205 58.0
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 2.9e-56 222.6 204 60.3
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 4.9e-56 221.9 209 57.9
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 6.4e-56 221.5 208 55.8
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 1.1e-55 220.7 202 57.4
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.1e-55 220.7 196 59.7
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 1.4e-55 220.3 196 58.2
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.9e-55 219.9 209 57.4
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 2.4e-55 219.5 174 65.5
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 3.2e-55 219.2 199 60.8
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 5.5e-55 218.4 197 60.4
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 5.5e-55 218.4 191 59.2
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 9.3e-55 217.6 207 56.0
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 2.3e-53 213.0 196 54.6
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 3.9e-53 212.2 211 59.2
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 3.9e-53 212.2 202 54.0
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 3.9e-53 212.2 208 56.2
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 1.1e-52 210.7 208 51.0
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 1.1e-52 210.7 208 51.0
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.5e-52 209.5 206 58.7
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 5.6e-52 208.4 200 57.0
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 1.3e-51 207.2 204 55.9
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 1.3e-51 207.2 196 58.2
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 1.3e-51 207.2 198 52.5
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 3.7e-51 205.7 199 52.3
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 3.7e-51 205.7 199 56.3
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 2.4e-50 203.0 202 51.0
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 5.3e-50 201.8 196 51.5
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 5.3e-50 201.8 197 56.9
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 6.9e-50 201.4 197 56.3
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 3.4e-49 199.1 203 52.7
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 7.6e-49 198.0 207 55.6
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 1.0e-48 197.6 208 50.0
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 1.3e-48 197.2 198 51.0
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.7e-48 196.8 211 51.7
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 2.2e-48 196.4 198 50.5
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 4.9e-48 195.3 209 52.6
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 6.5e-48 194.9 197 53.3
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 1.1e-47 194.1 203 52.7
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 1.4e-47 193.7 146 65.8
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 1.4e-47 193.7 197 53.3
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.4e-47 193.7 196 52.6
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 1.4e-47 193.7 201 50.2
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 1.9e-47 193.4 222 46.8
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 2.5e-47 193.0 203 52.2
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 2.5e-47 193.0 203 52.2
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 2.5e-47 193.0 197 52.8
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 3.2e-47 192.6 222 46.8
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 5.5e-47 191.8 200 52.5
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 2.1e-46 189.9 212 47.2
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 2.7e-46 189.5 198 53.0
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 4.6e-46 188.7 198 51.5
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 6.0e-46 188.3 200 51.5
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 6.0e-46 188.3 203 49.3
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 1.3e-45 187.2 209 47.4
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 3.9e-45 185.7 199 53.8
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 3.3e-44 182.6 202 50.0
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 1.8e-42 176.8 197 45.7
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 1.7e-40 170.2 226 44.7
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.8e-37 160.2 215 46.5
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 3.9e-37 159.1 129 60.5
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 8.7e-37 157.9 208 43.8
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 1.3e-35 154.1 211 46.0
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 2.2e-35 153.3 212 45.3
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 2.2e-35 153.3 212 45.3
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 2.2e-35 153.3 212 45.3
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 2.8e-35 152.9 195 46.2
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 2.8e-35 152.9 218 46.3
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 2.8e-35 152.9 207 44.9
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 3.1e-34 149.4 212 44.3
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 9.1e-34 147.9 120 67.5
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 1.2e-33 147.5 203 44.8
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 2.5e-31 139.8 212 42.9
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 2.5e-31 139.8 119 63.9
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 6.7e-29 131.7 193 42.0
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 3.1e-26 122.9 196 39.8
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 3.1e-26 122.9 207 40.1
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 5.9e-25 118.6 83 67.5
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 4.7e-22 109.0 185 31.9
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 1.8e-21 107.1 194 37.6
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 9.7e-20 101.3 177 34.5
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 2.2e-19 100.1 139 42.4
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 1.2e-17 94.4 192 33.9
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 1.6e-14 84.0 50 84.0
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 4.0e-13 79.3 129 44.2
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 5.2e-13 79.0 87 43.7
arahy.Tifrunner.gnm1.ann1.Y76JQK Arachis hypogaea HOM05D004800 ORTHO05D005842 1.4e-10 70.9 202 32.2
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 7.0e-10 68.6 95 33.7
TPR.G31499 Trifolium pratense HOM05D000201 ORTHO05D016113 1.2e-09 67.8 50 74.0
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 5.9e-09 65.5 104 34.6
arahy.Tifrunner.gnm1.ann1.RJ1WNK Arachis hypogaea HOM05D004800 ORTHO05D005842 6.5e-08 62.0 112 44.6
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 1.6e-06 57.4 71 53.5
arahy.Tifrunner.gnm1.ann1.HEPM80 Arachis hypogaea HOM05D004800 ORTHO05D005842 2.7e-06 56.6 79 41.8
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 4.7e-06 55.8 69 50.7
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 4.7e-06 55.8 69 50.7
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 6.1e-06 55.5 62 56.5


User provided reference genes

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