Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 0.0e+00 1159.4 624 100.0
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 2.9e-258 895.2 617 81.5
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 9.5e-254 880.2 626 79.9
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 6.9e-204 714.5 629 67.4
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 1.8e-199 699.9 628 67.2
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 2.4e-188 662.9 631 65.5
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 3.8e-186 655.6 632 64.1
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 2.0e-179 633.3 628 60.2
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 1.1e-177 627.5 482 71.6
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 5.9e-163 578.6 630 57.6
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 1.3e-157 560.8 648 56.3
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 1.3e-157 560.8 637 55.4
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 1.8e-90 337.8 638 42.8
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 2.8e-88 330.5 668 39.8
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 5.9e-86 322.8 637 41.6
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 4.2e-84 316.6 654 41.0
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 5.5e-84 316.2 641 42.3
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 2.0e-81 307.8 659 40.5
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 8.2e-80 302.4 637 39.6
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 9.1e-79 298.9 526 43.0
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 5.9e-78 296.2 639 40.1
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 1.0e-77 295.4 648 39.0
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 8.5e-77 292.4 641 39.0
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 6.1e-75 286.2 598 41.8
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 4.0e-74 283.5 650 39.4
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 4.4e-73 280.0 657 37.0
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 9.7e-73 278.9 640 38.6
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 1.3e-72 278.5 645 39.7
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 4.8e-72 276.6 645 36.4
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 6.3e-72 276.2 647 36.8
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 1.8e-71 274.6 700 36.9
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 5.3e-71 273.1 638 39.0
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.7e-69 268.1 620 39.2
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 3.8e-69 266.9 499 43.1
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 5.0e-69 266.5 619 38.1
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 4.2e-68 263.5 637 38.1
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 1.2e-67 261.9 452 42.0
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 2.3e-66 257.7 635 38.9
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 6.8e-66 256.1 649 35.3
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 2.6e-65 254.2 629 36.2
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 3.4e-65 253.8 496 39.9
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 1.7e-64 251.5 693 33.8
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 2.2e-64 251.1 724 36.2
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 3.7e-64 250.4 647 36.6
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 4.8e-64 250.0 664 34.3
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 8.3e-64 249.2 549 42.1
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 6.5e-61 239.6 439 39.4
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 1.5e-57 228.4 323 50.2
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 1.3e-56 225.3 611 38.5
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.7e-56 224.9 609 35.8
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.8e-56 224.2 600 36.8
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 3.7e-56 223.8 609 34.5
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 8.3e-56 222.6 490 37.6
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 5.4e-55 219.9 652 34.7
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 1.2e-54 218.8 531 36.3
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 3.5e-54 217.2 626 34.0
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.0e-50 205.7 541 34.8
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 1.4e-50 205.3 603 32.8
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 3.0e-50 204.1 526 36.7
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 8.9e-50 202.6 531 33.9
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 1.2e-49 202.2 630 34.1
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 9.8e-49 199.1 404 38.1
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 1.3e-48 198.7 607 32.5
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 1.1e-47 195.7 537 34.6
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 1.1e-47 195.7 416 35.8
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 1.4e-47 195.3 461 37.3
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 2.4e-47 194.5 620 31.8
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 5.4e-47 193.4 609 32.0
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 7.0e-47 193.0 612 31.7
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 7.0e-47 193.0 413 40.9
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 7.0e-47 193.0 612 31.7
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 1.2e-46 192.2 306 45.8
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 1.6e-46 191.8 322 43.2
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 3.5e-46 190.7 614 33.4
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 1.7e-45 188.3 537 32.4
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 3.0e-45 187.6 552 36.1
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 3.0e-45 187.6 599 32.6
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 8.6e-45 186.0 406 39.4
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 8.6e-45 186.0 406 39.4
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 1.5e-44 185.3 804 29.0
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 3.3e-44 184.1 531 32.2
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 7.3e-44 183.0 623 32.1
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 7.3e-44 183.0 428 38.8
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 9.5e-44 182.6 644 33.1
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 1.2e-43 182.2 425 37.6
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 3.6e-43 180.6 334 42.5
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 5.2e-42 176.8 633 32.1
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 8.9e-42 176.0 617 29.7
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 2.0e-41 174.9 408 34.8
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 3.4e-41 174.1 361 37.7
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 1.3e-40 172.2 534 35.0
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.1e-39 169.1 626 32.9
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 1.1e-39 169.1 371 38.3
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 1.0e-37 162.5 681 30.1
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 1.0e-37 162.5 503 33.4
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 1.3e-37 162.2 331 37.5
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 1.1e-36 159.1 164 54.3
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 5.6e-36 156.8 623 31.0
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 3.6e-35 154.1 371 35.0
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 2.3e-34 151.4 548 33.0
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 3.1e-34 151.0 652 33.6
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 3.1e-34 151.0 650 32.8
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 1.5e-33 148.7 647 30.9
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 3.7e-32 144.1 670 29.7
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 2.4e-31 141.4 172 45.9
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 3.2e-31 141.0 525 29.7
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 3.2e-31 141.0 541 28.8
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 3.5e-30 137.5 373 34.9
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 1.7e-29 135.2 319 34.8
arahy.Tifrunner.gnm1.ann1.T032QQ Arachis hypogaea HOM05D005642 ORTHO05D010845 1.9e-28 131.7 88 72.7
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 1.9e-28 131.7 370 35.7
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 5.6e-28 130.2 583 31.7
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 2.8e-27 127.9 495 31.3
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 2.2e-24 118.2 495 30.1
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.9e-23 115.2 512 28.3
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 1.9e-23 115.2 383 31.3
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 6.0e-22 110.2 211 44.1
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 5.1e-21 107.1 161 51.6
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 1.1e-18 99.4 306 29.1
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 4.0e-18 97.4 446 29.1
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 2.0e-17 95.1 405 28.4
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 4.4e-17 94.0 398 29.1
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 9.9e-17 92.8 317 28.7
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 2.2e-16 91.7 507 28.2
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 1.1e-15 89.4 181 36.5
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 5.4e-15 87.0 360 27.2
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 6.0e-14 83.6 233 37.3
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 1.0e-13 82.8 518 28.0
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 1.9e-12 78.6 268 36.9
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 4.3e-12 77.4 156 38.5
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 5.6e-12 77.0 476 25.6
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 1.6e-11 75.5 400 28.5
HanXRQChr06g0180441 Helianthus annuus HOM05D006756 ORTHO05D001869 2.8e-11 74.7 302 27.8
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 4.8e-11 73.9 68 58.8
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 2.6e-09 68.2 268 28.7
MBI11_g01313_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 5.8e-09 67.0 250 26.0
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 1.3e-08 65.9 489 23.9
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 1.7e-08 65.5 152 38.8
Haze_03430 Corylus avellana HOM05D003044 ORTHO05D001869 2.2e-08 65.1 265 29.1
Actinidia21975 Actinidia chinensis HOM05D006756 ORTHO05D001869 2.9e-08 64.7 254 30.3
Lalb_Chr19g0128991 Lupinus albus HOM05D003044 ORTHO05D001869 6.4e-08 63.5 259 27.4
MELO3C019915.2 Cucumis melo HOM05D003044 ORTHO05D001869 1.4e-07 62.4 275 26.9
TAR636G1345 Trochodendron aralioides HOM05D003044 ORTHO05D001869 1.4e-07 62.4 471 22.1
Cfa010501 Carpinus fangiana HOM05D003044 ORTHO05D001869 1.9e-07 62.0 265 29.1
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 4.2e-07 60.8 44 68.2
Dinv36508 Davidia involucrata HOM05D006756 ORTHO05D001869 7.1e-07 60.1 258 27.1
BraA10t44048Z Brassica rapa HOM05D006756 ORTHO05D001869 9.3e-07 59.7 187 32.6
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 9.3e-07 59.7 262 27.5
Thhalv10012771m.g Eutrema salsugineum HOM05D006756 ORTHO05D001869 9.3e-07 59.7 178 30.9
A10p19720 Brassica napus HOM05D007647 ORTHO05D009644 1.2e-06 59.3 186 32.8
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 1.6e-06 58.9 100 42.0
Psat6g171360 Pisum sativum HOM05D003044 ORTHO05D001869 1.6e-06 58.9 248 30.6
Sp6g24200 Schrenkiella parvula HOM05D006756 ORTHO05D001869 1.6e-06 58.9 261 27.2
BcaB05g22863 Brassica carinata HOM05D006756 ORTHO05D001869 2.1e-06 58.5 179 28.5
BcaC04g19408 Brassica carinata HOM05D006756 ORTHO05D001869 2.1e-06 58.5 282 28.7
Sed0023754 Sechium edule HOM05D003044 ORTHO05D001869 2.7e-06 58.2 255 27.5
Oeu025606.1 Olea europaea HOM05D003044 ORTHO05D001869 3.5e-06 57.8 260 26.2
Migut.F01554 Erythranthe guttata HOM05D003044 ORTHO05D001869 6.0e-06 57.0 258 25.6
SGA_v2.0_scaffold13G06427 Striga asiatica HOM05D003044 ORTHO05D001869 7.9e-06 56.6 335 24.8


User provided reference genes

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