Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 4.7e-255 884.0 444 100.0
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 5.1e-201 704.5 441 82.8
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 2.3e-185 652.5 446 74.9
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 5.7e-184 647.9 438 76.0
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.7e-178 629.0 438 74.0
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 3.6e-178 628.6 440 75.5
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 5.1e-177 624.8 362 85.1
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 2.7e-170 602.4 451 68.5
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 2.8e-167 592.4 439 70.8
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 3.5e-165 585.5 399 72.9
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 1.1e-163 580.5 372 77.7
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 8.5e-156 554.3 361 74.2
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 1.0e-153 547.4 437 65.0
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 1.0e-153 547.4 431 66.6
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 2.6e-152 542.7 396 68.7
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 7.5e-152 541.2 356 73.9
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 2.2e-151 539.7 333 81.4
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 2.4e-150 536.2 396 68.2
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 4.1e-150 535.4 396 68.2
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 4.1e-150 535.4 313 83.4
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 5.4e-150 535.0 396 67.9
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 9.1e-150 534.3 396 67.9
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 4.5e-149 531.9 417 64.7
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 4.5e-149 531.9 358 72.1
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.3e-148 530.4 428 64.7
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.3e-148 530.4 354 71.8
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 1.3e-148 530.4 354 74.6
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.7e-148 530.0 428 64.7
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 3.8e-148 528.9 418 64.6
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 6.6e-148 528.1 392 67.9
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 8.6e-148 527.7 422 64.5
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 8.6e-148 527.7 354 72.6
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.5e-147 526.9 436 63.8
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.5e-147 526.2 348 73.3
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 2.5e-147 526.2 376 69.7
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 1.2e-146 523.9 392 68.4
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 3.6e-146 522.3 351 72.4
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 3.6e-146 522.3 387 67.7
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 4.7e-146 521.9 358 72.3
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 6.1e-146 521.5 437 61.6
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 6.1e-146 521.5 355 72.7
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 1.0e-145 520.8 343 73.8
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 5.2e-145 518.5 426 63.8
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 6.8e-145 518.1 367 69.2
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.4e-144 515.8 353 71.4
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 3.4e-144 515.8 356 70.5
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 4.4e-144 515.4 355 70.7
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 7.5e-144 514.6 346 72.8
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 7.5e-144 514.6 353 71.4
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 7.5e-144 514.6 358 69.6
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 9.8e-144 514.2 358 69.3
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 2.2e-143 513.1 353 70.5
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.8e-143 512.7 358 69.0
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.7e-143 512.3 356 70.8
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 4.9e-143 511.9 355 70.1
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 4.9e-143 511.9 379 67.3
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 4.9e-143 511.9 377 67.1
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 6.3e-143 511.5 363 70.2
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 6.3e-143 511.5 355 69.0
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 8.3e-143 511.1 418 62.7
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.4e-142 509.6 347 70.9
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 7.0e-142 508.1 411 65.5
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 7.0e-142 508.1 347 71.2
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 9.2e-142 507.7 345 69.9
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 1.2e-141 507.3 348 73.9
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 1.6e-141 506.9 357 68.9
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 2.0e-141 506.5 350 71.1
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.7e-141 506.1 349 71.6
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 3.5e-141 505.8 347 70.6
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 4.5e-141 505.4 348 69.5
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 1.0e-140 504.2 346 69.9
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.7e-140 503.4 349 70.8
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 5.0e-140 501.9 347 70.0
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 1.1e-139 500.7 345 71.6
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 1.5e-139 500.4 355 68.5
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 1.5e-139 500.4 338 69.2
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 1.9e-139 500.0 347 68.9
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 1.9e-139 500.0 348 72.7
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.9e-139 500.0 378 66.4
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 3.3e-139 499.2 345 71.3
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 3.3e-139 499.2 353 70.3
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 4.3e-139 498.8 409 63.1
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 5.6e-139 498.4 360 67.2
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 9.5e-139 497.7 360 69.2
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.2e-138 497.3 351 68.4
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 3.6e-138 495.7 364 67.9
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 6.8e-137 491.5 346 67.9
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 6.8e-137 491.5 334 71.3
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 1.5e-136 490.3 346 67.6
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 1.5e-136 490.3 347 68.3
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.4e-136 488.8 303 76.9
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 9.8e-136 487.6 447 57.9
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 1.7e-135 486.9 351 66.7
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 4.9e-135 485.3 346 67.9
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.4e-134 483.0 428 61.0
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 1.7e-132 476.9 303 74.9
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.5e-131 473.8 345 67.0
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 1.9e-131 473.4 303 72.9
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 2.5e-131 473.0 330 68.5
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 3.3e-131 472.6 385 61.3
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 4.3e-131 472.2 321 72.0
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.6e-130 470.3 361 66.5
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.1e-130 469.9 313 74.1
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 1.1e-129 467.6 357 65.0
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 1.8e-129 466.8 276 80.4
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 4.9e-127 458.8 325 68.0
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-126 457.6 303 72.6
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 2.1e-125 453.4 325 67.7
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.3e-124 449.9 393 58.5
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 3.9e-124 449.1 317 70.3
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.8e-122 443.0 345 65.2
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 3.6e-122 442.6 267 78.3
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 9.2e-118 427.9 335 65.4
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 1.6e-117 427.2 388 56.2
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 2.5e-115 419.9 347 61.7
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 3.3e-115 419.5 325 64.0
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 3.6e-114 416.0 385 56.1
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.2e-112 411.0 417 52.5
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 2.0e-112 410.2 477 47.2
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 3.2e-110 402.9 249 73.9
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 6.2e-106 388.7 245 73.5
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.9e-99 367.1 298 64.4
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.5e-99 366.7 222 80.2
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 6.2e-98 362.1 257 70.0
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 3.4e-96 356.3 307 63.5
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 9.9e-96 354.8 319 61.4
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 1.3e-95 354.4 303 60.4
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.9e-95 353.2 382 50.0
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 8.4e-95 351.7 195 82.1
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 3.5e-93 346.3 359 51.3
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 7.9e-93 345.1 320 57.5
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 3.9e-92 342.8 369 48.2
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 6.7e-92 342.0 384 51.6
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 1.1e-91 341.3 356 50.6
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.6e-90 337.4 303 59.7
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 4.0e-89 332.8 210 72.9
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 5.5e-86 322.4 216 75.5
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 4.8e-82 309.3 237 63.7
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 5.0e-79 299.3 286 55.9
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.9e-78 297.4 230 68.7
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 1.9e-78 297.4 281 50.9
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 4.2e-78 296.2 304 54.3
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.5e-75 287.0 194 74.7
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 7.2e-70 268.9 193 72.0
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.6e-69 266.2 194 71.1
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 6.1e-69 265.8 335 49.0
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 2.6e-64 250.4 134 86.6
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 8.5e-63 245.4 190 67.4
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 2.3e-60 237.3 334 47.3
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 5.3e-49 199.5 125 73.6
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 6.1e-45 186.0 159 63.5
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 3.0e-44 183.7 222 42.3
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 1.3e-42 178.3 236 48.3
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 4.1e-41 173.3 463 29.8
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 5.9e-40 169.5 160 51.9
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.7e-37 160.6 294 31.0
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 6.1e-37 159.5 89 80.9
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 1.5e-35 154.8 117 69.2
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.5e-35 154.8 335 34.6
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.1e-25 122.1 205 34.1
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 6.0e-16 89.7 69 58.0
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 1.6e-13 81.6 49 73.5
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 3.6e-13 80.5 67 53.7
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.1e-12 79.0 82 51.2
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 1.3e-10 72.0 75 49.3
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 2.9e-10 70.9 75 49.3
Glyma.04G081300 Glycine max HOM05D004081 ORTHO05D025646 1.1e-09 68.9 58 65.5
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 7.1e-09 66.2 141 35.5
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 7.8e-08 62.8 76 50.0
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 5.1e-07 60.1 41 73.2
Glyma.04G081501 Glycine max HOM05D004081 ORTHO05D025646 6.6e-07 59.7 68 50.0


User provided reference genes

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