Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 0.0e+00 2265.3 1130 100.0
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 0.0e+00 1583.2 1191 72.5
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 0.0e+00 1582.0 1188 72.1
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 0.0e+00 1560.4 1190 71.8
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 0.0e+00 1554.3 1198 69.9
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 0.0e+00 1552.3 1188 70.5
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 0.0e+00 1392.9 1195 64.4
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 0.0e+00 1347.8 1194 63.5
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 0.0e+00 1333.9 1201 62.7
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 0.0e+00 1320.4 1198 61.1
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 0.0e+00 1313.1 1198 61.0
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 0.0e+00 1181.8 1195 57.2
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 0.0e+00 1181.4 1192 57.6
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 0.0e+00 1130.2 1199 54.7
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 0.0e+00 1129.8 1192 54.5
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 6.1e-299 1031.2 1156 53.1
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 5.3e-170 602.8 1293 36.7
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 1.6e-153 548.1 1278 35.1
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 5.2e-149 533.1 1337 33.8
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.3e-144 518.5 1294 34.6
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 9.8e-140 502.3 1178 35.0
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 3.2e-130 470.7 1290 32.2
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 1.4e-125 455.3 1195 33.8
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 4.4e-124 450.3 1145 33.9
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 5.4e-122 443.4 1293 32.4
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 9.2e-122 442.6 1292 32.0
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 9.5e-119 432.6 1293 31.4
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.7e-115 421.8 1298 31.6
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 1.4e-114 418.7 1301 31.6
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 5.4e-114 416.8 1305 31.1
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.2e-114 416.0 1306 31.3
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.0e-113 413.3 1290 31.5
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 6.0e-113 413.3 1297 30.2
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 2.1e-110 404.8 1282 31.0
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 8.1e-110 402.9 1311 30.4
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 9.9e-108 396.0 1359 28.8
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 9.3e-106 389.4 1302 30.3
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 1.3e-104 385.6 1296 30.2
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 2.3e-104 384.8 1294 29.7
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 6.9e-101 373.2 1296 29.2
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 1.3e-96 359.0 1325 28.2
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 4.8e-94 350.5 1312 28.7
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 5.8e-92 343.6 1271 28.6
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 4.2e-90 337.4 1195 28.9
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 8.7e-88 329.7 1290 27.9
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 1.1e-87 329.3 1257 27.4
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 9.6e-87 326.2 1294 28.4
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 6.2e-86 323.6 1259 28.6
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.1e-85 322.8 1282 28.3
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.4e-85 322.4 1284 28.0
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 6.9e-85 320.1 1284 28.0
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 2.2e-83 315.1 617 39.5
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 4.3e-79 300.8 1081 29.0
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.2e-76 292.7 1224 29.0
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 3.0e-72 278.1 1245 27.6
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 4.3e-71 274.2 1255 27.3
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.8e-70 271.6 1205 27.1
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.4e-69 268.5 1254 27.2
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.2e-67 261.9 1284 26.4
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 1.9e-66 258.8 1220 27.7
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.4e-64 252.7 1413 25.3
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.4e-61 241.9 1212 26.1
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 2.6e-60 238.4 1206 27.2
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 1.7e-59 235.7 1021 27.3
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.2e-59 235.3 1236 27.0
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 5.5e-58 230.7 1275 26.0
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.3e-56 225.3 1225 26.6
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 1.5e-55 222.6 793 28.9
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.0e-55 222.2 1218 26.8
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 2.6e-55 221.9 1210 26.9
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 4.4e-55 221.1 1215 24.5
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 7.7e-52 210.3 1217 25.5
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 3.2e-50 204.9 1211 26.5
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 5.5e-50 204.1 1234 26.5
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.1e-49 202.2 1238 26.6
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 2.7e-49 201.8 1211 25.8
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.5e-47 196.1 568 33.3
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 2.6e-47 195.3 1193 26.3
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.7e-46 192.6 1197 26.1
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 8.2e-46 190.3 1296 24.2
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.7e-43 182.6 1253 25.8
Lalb_Chr22g0352251 Lupinus albus HOM05D004021 ORTHO05D003767 6.1e-41 174.1 502 30.9
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 8.0e-41 173.7 1196 24.5
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 4.4e-39 167.9 1295 24.0
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 6.3e-38 164.1 1204 24.3
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 5.9e-36 157.5 1282 24.7
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 1.7e-35 156.0 1171 25.3
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 1.5e-34 152.9 1192 25.2
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 9.5e-34 150.2 1189 25.3
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 1.2e-33 149.8 1165 25.1
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 2.8e-33 148.7 1161 26.0
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 4.7e-33 147.9 1240 24.7
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 8.0e-33 147.1 1147 23.7
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 1.4e-32 146.4 384 31.2
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 4.0e-32 144.8 1165 24.8
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 4.0e-32 144.8 1165 24.8
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 1.5e-31 142.9 1167 25.6
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 2.6e-31 142.1 1264 22.5
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 5.7e-31 141.0 1192 22.6
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 9.8e-31 140.2 1136 24.0
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 1.3e-30 139.8 1134 23.9
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 2.4e-29 135.6 1154 24.0
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 4.1e-29 134.8 1154 23.9
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 5.4e-29 134.4 1151 24.1
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 2.3e-27 129.0 1297 22.7
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 5.0e-27 127.9 1142 24.0
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 2.5e-26 125.6 275 34.5
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 2.5e-26 125.6 1172 24.8
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.4e-24 119.8 1269 22.1
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 1.4e-24 119.8 1295 23.6
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.8e-24 119.4 1284 22.4
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 4.0e-24 118.2 558 27.8
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.2e-24 117.9 1292 22.6
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 2.0e-23 115.9 545 27.5
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 3.4e-23 115.2 556 30.4
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 2.9e-22 112.1 1180 22.8
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 4.9e-22 111.3 1049 22.3
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 8.3e-22 110.5 1277 23.3
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 1.1e-21 110.2 553 26.9
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 1.8e-21 109.4 415 27.7
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 2.4e-21 109.0 416 27.9
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.4e-21 109.0 1230 23.1
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 2.4e-21 109.0 1129 23.8
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 5.4e-21 107.8 1153 22.5
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.2e-21 107.1 465 28.2
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.2e-20 106.7 1136 22.1
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.2e-20 106.7 465 28.2
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 2.0e-20 105.9 1160 23.5
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.0e-20 105.9 465 28.0
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.7e-19 102.8 720 24.3
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 6.2e-17 94.4 1177 22.3
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 1.4e-16 93.2 1156 22.3
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 8.9e-16 90.5 85 57.6
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 4.4e-15 88.2 340 27.6
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 7.5e-15 87.4 709 25.2
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.5e-15 87.4 423 27.7
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 7.5e-15 87.4 649 22.5
Lalb_Chr14g0372311 Lupinus albus HOM05D004021 ORTHO05D003767 1.3e-14 86.7 699 23.9
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 2.9e-14 85.5 703 24.9
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 3.7e-14 85.1 1309 22.7
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 3.2e-13 82.0 246 33.7
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 4.1e-13 81.6 288 29.9
VMungo0647G2380 Vigna mungo HOM05D058389 ORTHO05D003767 4.1e-13 81.6 328 29.3
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.0e-13 80.9 331 27.5
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 1.2e-12 80.1 1131 22.5
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 6.0e-12 77.8 289 28.7
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 6.0e-12 77.8 1167 21.3
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 1.7e-11 76.3 1221 22.3
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 2.3e-11 75.9 235 31.5
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 3.9e-11 75.1 360 27.8
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 3.9e-11 75.1 166 32.5
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 8.6e-11 73.9 1120 21.8
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 8.6e-11 73.9 84 45.2
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 3.3e-10 72.0 82 45.1
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.3e-10 71.6 650 23.4
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.2e-09 70.1 697 22.7
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.6e-09 69.7 682 22.1
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 3.6e-09 68.6 74 47.3
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 4.7e-09 68.2 286 27.3
Nitab4.5_0000406g0040 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.7e-09 68.2 587 22.5
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 1.1e-08 67.0 121 33.9
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 8.9e-08 63.9 83 41.0
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 1.2e-07 63.5 86 44.2
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 1.5e-07 63.2 56 51.8
Dinv10761 Davidia involucrata HOM05D024977 ORTHO05D003767 1.5e-07 63.2 75 38.7
Dinv30643 Davidia involucrata HOM05D024977 ORTHO05D003767 1.5e-07 63.2 75 38.7
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 1.5e-07 63.2 92 35.9
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 7.5e-07 60.8 65 50.8
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 1.3e-06 60.1 130 30.0
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 2.9e-06 58.9 110 33.6


User provided reference genes

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