Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15580_v3 Cicer arietinum L. HOM05D008625 ORTHO05D010623 1.4e-66 256.1 130 100.0
Medtr3g109900 Medicago truncatula HOM05D008625 ORTHO05D010623 1.3e-43 179.9 131 75.6
TPR.G15108 Trifolium pratense HOM05D008625 ORTHO05D010623 2.9e-43 178.7 135 73.3
Medtr3g109920 Medicago truncatula HOM05D008625 ORTHO05D010623 3.2e-42 175.3 133 74.4
Psat5g020440 Pisum sativum HOM05D008625 ORTHO05D010623 1.9e-39 166.0 130 73.8
Psat5g020400 Pisum sativum HOM05D008625 ORTHO05D010623 4.7e-38 161.4 127 71.7
Lj1g0026047 Lotus japonicus HOM05D008625 ORTHO05D010623 7.0e-34 147.5 126 63.5
VMungo1309G2682 Vigna mungo HOM05D008625 ORTHO05D010623 3.9e-32 141.7 139 61.2
Phvul.009G111200 Phaseolus vulgaris HOM05D008625 ORTHO05D010623 3.6e-30 135.2 141 58.2
Glyma.06G087400 Glycine max HOM05D008625 ORTHO05D010623 6.2e-30 134.4 147 55.8
Glyma.04G085800 Glycine max HOM05D008625 ORTHO05D010623 4.0e-29 131.7 145 55.9
Lalb_Chr08g0242961 Lupinus albus HOM05D008625 ORTHO05D010623 1.2e-28 130.2 151 50.3
arahy.Tifrunner.gnm1.ann1.66V3J9 Arachis hypogaea HOM05D008625 ORTHO05D010623 4.6e-25 118.2 153 51.0
Thecc.09G047000 Theobroma cacao HOM05D001131 ORTHO05D010623 2.7e-17 92.4 141 45.4
MD15G1091300 Malus domestica HOM05D001131 ORTHO05D010623 1.5e-15 86.7 158 41.1
FAN20G1640 Fragaria x ananassa HOM05D008625 ORTHO05D010623 9.6e-15 84.0 165 39.4
MD08G1111800 Malus domestica HOM05D008625 ORTHO05D010623 9.6e-15 84.0 158 39.9
FAN15G2009 Fragaria x ananassa HOM05D008625 ORTHO05D010623 1.6e-14 83.2 165 39.4
Cpa.g.sc7.202 Carica papaya HOM05D008625 ORTHO05D010623 6.2e-14 81.3 132 40.2
Prupe.1G446200 Prunus persica HOM05D001131 ORTHO05D010623 8.1e-14 80.9 166 37.3
TWI63G1453 Tripterygium wilfordii HOM05D001131 ORTHO05D000972 2.4e-13 79.3 164 36.6
Gohir.A06G092000 Gossypium hirsutum HOM05D001131 ORTHO05D010623 5.3e-13 78.2 150 40.7
Gorai.010G105500 Gossypium raimondii HOM05D001131 ORTHO05D010623 6.9e-13 77.8 150 40.7
FvH4_2g35430 Fragaria vesca HOM05D008625 ORTHO05D010623 9.0e-13 77.4 167 37.7
Ciclev10009617m.g Citrus clementina HOM05D001131 ORTHO05D000972 1.2e-12 77.0 153 37.3
Aa31sc706G10 Aethionema arabicum HOM05D008625 ORTHO05D010623 1.5e-12 76.6 149 38.9
A01p05420 Brassica napus HOM05D008625 ORTHO05D010623 1.5e-12 76.6 145 40.7
BraA01t00516Z Brassica rapa HOM05D008625 ORTHO05D010623 1.5e-12 76.6 145 40.7
COL.COLO4_20990 Corchorus olitorius HOM05D001131 ORTHO05D010623 1.5e-12 76.6 152 41.4
Gohir.D06G091500 Gossypium hirsutum HOM05D001131 ORTHO05D010623 1.5e-12 76.6 151 39.7
THA.LOC104803750 Tarenaya hassleriana HOM05D008625 ORTHO05D010623 1.5e-12 76.6 127 42.5
BcaC09g52083 Brassica carinata HOM05D008625 ORTHO05D010623 2.6e-12 75.9 142 40.1
C01p06020 Brassica napus HOM05D008625 ORTHO05D010623 2.6e-12 75.9 142 40.1
BolC1t00594H Brassica oleracea HOM05D008625 ORTHO05D010623 2.6e-12 75.9 143 39.9
Sabra18G0045000 Salix brachista HOM05D001131 ORTHO05D000972 2.6e-12 75.9 163 35.6
FAN27G2073 Fragaria x ananassa HOM05D008625 ORTHO05D010623 5.8e-12 74.7 167 37.1
Carub.0007s0763 Capsella rubella HOM05D008625 ORTHO05D010623 1.3e-11 73.6 147 40.1
CARHR240860 Cardamine hirsuta HOM05D008625 ORTHO05D010623 1.7e-11 73.2 145 39.3
A03p61610 Brassica napus HOM05D008625 ORTHO05D010623 2.9e-11 72.4 151 38.4
TAR624G0151 Trochodendron aralioides HOM05D001131 ORTHO05D000972 2.9e-11 72.4 148 35.8
AL7G18860 Arabidopsis lyrata HOM05D008625 ORTHO05D010623 3.8e-11 72.0 147 39.5
BcaNung06387 Brassica carinata HOM05D008625 ORTHO05D010623 3.8e-11 72.0 151 38.4
BcaC09g52084 Brassica carinata HOM05D008625 ORTHO05D010623 6.4e-11 71.2 142 39.4
Potri.018G046500 Populus trichocarpa HOM05D001131 ORTHO05D000972 6.4e-11 71.2 161 33.5
RcHm_v2.0_Chr6g0306461 Rosa chinensis HOM05D008625 ORTHO05D010623 6.4e-11 71.2 168 36.3
TAR383G0743 Trochodendron aralioides HOM05D001131 ORTHO05D000972 6.4e-11 71.2 163 34.4
AT4G32860 Arabidopsis thaliana HOM05D008625 ORTHO05D010623 8.4e-11 70.9 147 39.5
C03p86970 Brassica napus HOM05D008625 ORTHO05D010623 8.4e-11 70.9 141 37.6
C03p86990 Brassica napus HOM05D008625 ORTHO05D010623 8.4e-11 70.9 141 37.6
BolC3t20994H Brassica oleracea HOM05D008625 ORTHO05D010623 8.4e-11 70.9 141 37.6
Nn8g39098 Nelumbo nucifera HOM05D001131 ORTHO05D000972 8.4e-11 70.9 154 33.8
C07p59370 Brassica napus HOM05D008625 ORTHO05D010623 1.1e-10 70.5 152 38.2
BolC7t46381H Brassica oleracea HOM05D008625 ORTHO05D010623 1.1e-10 70.5 152 38.2
BraA03t15203Z Brassica rapa HOM05D008625 ORTHO05D010623 1.4e-10 70.1 151 37.7
Sp7g30630 Schrenkiella parvula HOM05D008625 ORTHO05D010623 1.9e-10 69.7 152 36.8
GSVIVG01035287001 Vitis vinifera HOM05D001131 ORTHO05D000972 1.9e-10 69.7 165 33.3
Thhalv10026293m.g Eutrema salsugineum HOM05D008625 ORTHO05D010623 3.2e-10 68.9 153 36.6
A08p17870 Brassica napus HOM05D008625 ORTHO05D010623 4.2e-10 68.6 141 36.9
BraA08t33739Z Brassica rapa HOM05D008625 ORTHO05D010623 4.2e-10 68.6 141 36.9
DCAR_032098 Daucus carota HOM05D001131 ORTHO05D000972 7.1e-10 67.8 144 36.8
Potri.006G236700 Populus trichocarpa HOM05D001131 ORTHO05D000972 2.1e-09 66.2 156 32.7
SalBow5G1205 Salvia bowleyana HOM05D001131 ORTHO05D000972 2.7e-09 65.9 125 34.4
CSS0010038 Camellia sinensis var. sinensis HOM05D001131 ORTHO05D000972 3.5e-09 65.5 165 31.5
CSS0029495 Camellia sinensis var. sinensis HOM05D001131 ORTHO05D000972 3.5e-09 65.5 165 31.5
CSS0013249 Camellia sinensis var. sinensis HOM05D001131 ORTHO05D000972 6.0e-09 64.7 137 35.8
CANSAT25G2493 Cannabis sativa HOM05D008625 ORTHO05D010623 6.0e-09 64.7 168 32.1
MBI04_g06590_MAGBIO Magnolia biondii HOM05D001131 ORTHO05D000972 5.1e-08 61.6 153 35.3
Hma1.2p1_0945F.1_g240300 Hydrangea macrophylla HOM05D001131 ORTHO05D000972 6.6e-08 61.2 148 36.5
MD02G1064200 Malus domestica HOM05D001131 ORTHO05D000972 6.6e-08 61.2 124 35.5
PGR142G2343 Punica granatum HOM05D001131 ORTHO05D000972 6.6e-08 61.2 159 33.3
Sabra06G0185000 Salix brachista HOM05D001131 ORTHO05D000972 6.6e-08 61.2 157 31.8
Dinv41661 Davidia involucrata HOM05D001131 ORTHO05D000972 3.3e-07 58.9 152 34.2
Peaxi162Scf00665g00038 Petunia axillaris HOM05D001131 ORTHO05D000972 3.3e-07 58.9 52 51.9
Hma1.2p1_0012F.1_g007330 Hydrangea macrophylla HOM05D001131 ORTHO05D000972 5.6e-07 58.2 151 35.1
Actinidia09444 Actinidia chinensis HOM05D001131 ORTHO05D000972 9.6e-07 57.4 163 32.5
Cpa.g.sc40.62 Carica papaya HOM05D001131 ORTHO05D000972 9.6e-07 57.4 157 32.5
Duzib187G1193 Durio zibethinus HOM05D001131 ORTHO05D000972 2.1e-06 56.2 55 54.5
Aqoxy7G01451 Aquilegia oxysepala HOM05D001131 ORTHO05D000972 2.8e-06 55.8 164 29.3
THA.LOC104804518 Tarenaya hassleriana HOM05D008625 ORTHO05D010623 2.8e-06 55.8 111 37.8
BcaB03g12766 Brassica carinata HOM05D008625 ORTHO05D010623 4.8e-06 55.1 127 33.9
MD15G1195000 Malus domestica HOM05D001131 ORTHO05D000972 8.1e-06 54.3 49 57.1
Thecc.09G102000 Theobroma cacao HOM05D001131 ORTHO05D000972 8.1e-06 54.3 54 51.9


User provided reference genes

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