Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 7.7e-67 256.9 121 100.0
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 9.7e-54 213.4 108 90.7
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 7.0e-52 207.2 108 89.8
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 9.1e-52 206.8 108 87.0
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 9.1e-52 206.8 108 87.0
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 9.1e-52 206.8 108 89.8
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 2.0e-51 205.7 108 88.0
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 2.0e-51 205.7 108 85.2
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 2.0e-51 205.7 108 85.2
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 2.0e-51 205.7 108 86.1
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.5e-49 199.5 108 81.5
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 2.4e-44 182.2 108 75.0
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 5.4e-44 181.0 108 72.2
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 7.0e-44 180.6 108 71.3
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.2e-43 179.9 108 72.2
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.2e-43 179.9 108 72.2
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.6e-43 179.5 108 73.1
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.6e-43 179.5 109 70.6
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 1.6e-43 179.5 108 72.2
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 2.0e-43 179.1 108 72.2
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 2.7e-43 178.7 109 69.7
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 3.5e-43 178.3 108 74.1
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 3.5e-43 178.3 109 70.6
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 3.5e-43 178.3 108 71.3
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 4.5e-43 177.9 108 72.2
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 7.7e-43 177.2 108 70.4
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 1.0e-42 176.8 108 68.5
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.0e-42 176.8 109 71.6
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.3e-42 176.4 108 71.3
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.3e-42 176.4 108 71.3
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.7e-42 176.0 108 72.2
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.7e-42 176.0 108 71.3
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.7e-42 176.0 108 70.4
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 2.2e-42 175.6 108 68.5
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 2.2e-42 175.6 108 71.3
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 2.2e-42 175.6 108 68.5
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 5.0e-42 174.5 108 66.7
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 6.5e-42 174.1 109 67.0
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.1e-41 173.3 110 70.9
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 1.9e-41 172.6 108 69.4
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 3.2e-41 171.8 108 66.7
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 3.2e-41 171.8 108 65.7
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.5e-41 171.0 108 75.9
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 5.5e-41 171.0 108 69.4
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 5.5e-41 171.0 109 67.9
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 7.2e-41 170.6 108 67.6
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 7.2e-41 170.6 108 69.4
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 1.6e-40 169.5 108 68.5
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 1.6e-40 169.5 108 67.6
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 2.1e-40 169.1 108 66.7
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 2.1e-40 169.1 110 65.5
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 2.1e-40 169.1 108 66.7
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 2.8e-40 168.7 108 70.4
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 2.8e-40 168.7 108 66.7
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 2.8e-40 168.7 108 66.7
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 2.8e-40 168.7 108 69.4
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 2.8e-40 168.7 108 69.4
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 3.6e-40 168.3 108 63.9
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 4.7e-40 167.9 108 68.5
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 6.1e-40 167.5 109 68.8
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 8.0e-40 167.2 108 66.7
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 8.0e-40 167.2 108 67.6
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 1.0e-39 166.8 108 64.8
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 1.0e-39 166.8 106 66.0
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 1.4e-39 166.4 108 63.9
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.4e-39 166.4 106 68.9
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.4e-39 166.4 108 66.7
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.8e-39 166.0 106 66.0
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 1.8e-39 166.0 108 65.7
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.8e-39 166.0 108 64.8
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 2.3e-39 165.6 109 67.0
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 3.0e-39 165.2 108 66.7
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 4.0e-39 164.9 108 67.6
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 4.0e-39 164.9 108 65.7
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 8.8e-39 163.7 108 65.7
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.2e-38 163.3 108 64.8
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 1.2e-38 163.3 106 65.1
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 1.5e-38 162.9 108 62.0
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 2.0e-38 162.5 106 67.0
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 2.0e-38 162.5 106 67.0
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 2.6e-38 162.2 106 66.0
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.6e-38 162.2 106 64.2
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 3.4e-38 161.8 106 66.0
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 3.4e-38 161.8 108 61.1
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 4.4e-38 161.4 114 62.3
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 5.7e-38 161.0 106 65.1
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 5.7e-38 161.0 108 61.1
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 9.8e-38 160.2 106 66.0
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 9.8e-38 160.2 106 66.0
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 9.8e-38 160.2 108 64.8
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 2.2e-37 159.1 108 64.8
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 2.8e-37 158.7 119 58.0
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 3.7e-37 158.3 106 64.2
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 3.7e-37 158.3 119 58.0
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.1e-36 156.8 121 59.5
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.1e-36 156.8 111 64.0
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 2.4e-36 155.6 106 64.2
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 3.1e-36 155.2 109 58.7
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 3.1e-36 155.2 105 61.9
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.4e-36 154.5 120 59.2
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 5.4e-36 154.5 108 62.0
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 5.4e-36 154.5 108 62.0
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 9.2e-36 153.7 105 61.0
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 1.6e-35 152.9 108 62.0
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 2.0e-35 152.5 108 62.0
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.3e-34 149.8 108 62.0
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 1.7e-34 149.4 107 59.8
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.3e-34 149.1 114 59.6
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 1.9e-33 146.0 94 64.9
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.9e-33 146.0 108 62.0
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 2.5e-33 145.6 108 59.3
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 3.3e-33 145.2 109 60.6
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 7.3e-33 144.1 108 57.4
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.6e-32 142.9 130 50.8
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 4.7e-32 141.4 133 51.1
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 1.2e-30 136.7 106 54.7
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 1.2e-30 136.7 108 57.4
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 2.0e-30 136.0 102 54.9
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 3.4e-30 135.2 108 57.4
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 4.4e-30 134.8 109 59.6
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 4.4e-30 134.8 111 54.1
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 7.0e-28 127.5 131 47.3
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 9.2e-28 127.1 108 59.3
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 3.9e-26 121.7 105 46.7
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.6e-22 109.0 69 73.9
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 2.6e-22 109.0 124 50.0
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 4.9e-21 104.8 108 50.0
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 2.0e-19 99.4 62 66.1
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 6.0e-19 97.8 125 41.6
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.0e-18 97.1 108 51.9
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.0e-18 97.1 108 51.9
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 1.3e-18 96.7 108 46.3
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 6.6e-18 94.4 58 63.8
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.1e-17 93.6 56 67.9
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 4.3e-17 91.7 59 57.6
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 2.1e-16 89.4 63 57.1
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 8.6e-10 67.4 50 58.0
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.9e-09 66.2 72 44.4
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 4.3e-09 65.1 35 68.6
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 1.1e-07 60.5 39 59.0
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 1.4e-07 60.1 55 49.1
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.8e-07 59.7 52 57.7
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.8e-07 59.7 51 49.0
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 6.8e-07 57.8 40 65.0
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 2.0e-06 56.2 47 55.3


User provided reference genes

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