Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.2e-291 1005.7 502 100.0
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 4.1e-231 804.7 538 78.3
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 1.1e-223 780.0 518 78.4
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 3.3e-212 741.9 533 73.7
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 3.6e-203 711.8 485 74.8
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 5.4e-191 671.4 546 66.5
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 3.3e-188 662.1 542 65.7
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 8.1e-187 657.5 495 69.3
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 3.1e-178 629.0 453 72.0
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 2.6e-177 625.9 539 62.2
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 1.0e-173 614.0 538 62.5
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 1.8e-173 613.2 543 61.3
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 5.8e-169 598.2 476 65.1
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 3.8e-168 595.5 472 65.7
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 7.9e-166 587.8 554 58.5
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 9.6e-164 580.9 535 60.2
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 2.1e-163 579.7 521 59.9
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.1e-162 577.4 541 57.1
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 5.3e-162 575.1 511 59.9
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 9.0e-162 574.3 517 59.0
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 9.0e-162 574.3 487 62.4
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 2.6e-161 572.8 489 61.6
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 2.6e-161 572.8 520 58.1
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 3.8e-160 568.9 489 61.6
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 1.4e-159 567.0 545 57.6
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 3.2e-159 565.8 489 61.6
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.6e-158 563.5 533 57.2
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 1.8e-157 560.1 557 54.2
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 2.3e-157 559.7 547 54.8
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 5.1e-157 558.5 542 57.6
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 2.5e-156 556.2 486 60.7
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 5.7e-156 555.1 486 60.5
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 9.7e-156 554.3 523 56.4
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 2.8e-155 552.7 520 56.0
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 6.3e-155 551.6 523 55.8
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 1.1e-154 550.8 466 62.2
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 2.4e-154 549.7 523 55.6
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 3.1e-154 549.3 555 54.8
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 3.1e-154 549.3 543 56.2
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 3.4e-153 545.8 486 58.0
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 4.5e-153 545.4 531 56.3
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 7.6e-153 544.7 516 56.8
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 1.0e-152 544.3 551 55.2
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 5.0e-152 542.0 506 59.5
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 6.5e-152 541.6 550 55.1
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 8.5e-152 541.2 553 55.3
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.1e-151 540.8 485 59.8
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.4e-151 540.4 493 58.0
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.9e-151 540.0 542 54.1
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 4.2e-151 538.9 485 58.6
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 5.5e-151 538.5 558 53.8
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 9.4e-151 537.7 547 55.2
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.1e-150 536.6 508 58.5
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 3.6e-150 535.8 546 53.7
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 6.1e-150 535.0 512 54.9
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 7.9e-150 534.6 542 55.5
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 7.9e-150 534.6 537 54.4
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 3.0e-149 532.7 538 53.0
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 3.9e-149 532.3 532 54.3
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 6.7e-149 531.6 521 56.2
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 5.7e-148 528.5 519 53.8
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 5.7e-148 528.5 519 54.1
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 7.4e-148 528.1 523 54.5
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 2.2e-147 526.6 543 54.5
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 3.1e-146 522.7 483 56.3
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 4.1e-146 522.3 541 53.4
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 2.6e-145 519.6 525 51.8
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 4.5e-145 518.8 524 53.1
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 7.7e-145 518.1 534 53.6
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 2.2e-144 516.5 527 51.8
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 2.9e-144 516.2 487 55.2
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 3.8e-144 515.8 542 51.7
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 6.5e-144 515.0 469 55.9
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 8.5e-144 514.6 494 54.5
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 1.4e-143 513.8 544 52.9
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.4e-143 513.8 469 59.7
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.4e-143 513.8 538 53.3
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 9.4e-143 511.1 547 51.2
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 9.4e-143 511.1 548 52.0
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 1.6e-142 510.4 483 55.3
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 2.7e-142 509.6 529 50.5
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 7.9e-142 508.1 549 50.1
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 1.4e-141 507.3 490 55.7
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 5.1e-141 505.4 553 50.8
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 6.7e-141 505.0 547 50.6
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 1.3e-139 500.7 548 50.0
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 2.2e-139 500.0 548 49.8
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 3.7e-139 499.2 449 57.5
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 4.8e-139 498.8 519 52.6
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 6.3e-139 498.4 515 52.6
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 3.1e-138 496.1 537 51.2
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.5e-137 493.8 458 56.6
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 2.6e-137 493.0 556 50.4
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 1.1e-135 487.6 446 57.4
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 1.4e-135 487.3 495 51.5
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 4.2e-135 485.7 557 49.9
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 1.1e-132 477.6 566 49.3
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 4.4e-132 475.7 467 55.0
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 8.2e-131 471.5 564 47.3
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 4.1e-130 469.2 458 55.9
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 4.5e-129 465.7 483 50.9
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 7.7e-129 464.9 528 48.7
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 1.7e-128 463.8 541 48.2
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 2.2e-128 463.4 609 45.6
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 3.8e-128 462.6 585 44.8
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 6.5e-128 461.8 498 51.2
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 6.5e-128 461.8 480 54.2
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 3.6e-126 456.1 463 51.0
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 6.1e-126 455.3 555 47.6
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 5.7e-124 448.7 476 53.4
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 3.2e-119 433.0 544 46.9
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 9.4e-119 431.4 510 47.8
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.2e-113 414.5 436 50.5
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 8.0e-110 401.7 517 42.9
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 7.5e-108 395.2 556 43.2
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.2e-105 387.9 530 44.2
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 7.8e-105 385.2 444 49.3
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 1.7e-104 384.0 448 51.8
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 4.3e-103 379.4 480 44.2
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.6e-102 376.3 525 40.6
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.0e-101 372.9 579 39.4
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 5.8e-100 369.0 496 43.1
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.5e-100 368.6 519 41.2
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.4e-98 363.6 584 38.0
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.4e-98 363.6 584 38.0
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 6.8e-93 345.5 415 48.4
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 4.9e-91 339.3 318 56.0
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 2.7e-89 333.6 322 54.7
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.6e-86 324.3 413 45.8
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 1.3e-80 304.7 349 47.9
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 4.7e-78 296.2 526 36.1
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.5e-71 274.6 181 69.6
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.8e-69 267.7 584 33.0
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.6e-68 262.3 595 31.8
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 1.1e-66 258.5 166 69.3
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 5.4e-66 256.1 643 30.3
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 7.3e-63 245.7 405 37.8
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 4.6e-57 226.5 398 37.4
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 1.1e-47 195.3 466 31.3
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 4.0e-45 186.8 322 39.8
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 3.1e-37 160.6 129 65.9
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 1.1e-34 152.1 104 70.2
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.2e-33 148.7 128 61.7
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 5.1e-32 143.3 255 38.4
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 8.8e-32 142.5 169 51.5
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 9.7e-31 139.0 275 36.4
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 4.2e-26 123.6 146 52.1
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 7.2e-26 122.9 149 48.3
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 9.4e-26 122.5 94 59.6
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 4.7e-25 120.2 137 49.6
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 1.5e-23 115.2 179 37.4
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 1.7e-22 111.7 99 57.6
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 1.3e-19 102.1 180 34.4
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 2.0e-15 88.2 69 56.5
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 2.7e-09 67.8 89 46.1
arahy.Tifrunner.gnm1.ann1.E99XLH Arachis hypogaea HOM05D002152 ORTHO05D031610 1.0e-08 65.9 83 45.8
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 4.0e-08 63.9 39 71.8
SEGI_19140 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 1.7e-06 58.5 169 30.8
arahy.Tifrunner.gnm1.ann1.YJBK1K Arachis hypogaea HOM05D004583 ORTHO05D005469 2.2e-06 58.2 83 42.2
Cre13.g585651 Chlamydomonas reinhardtii HOM05D004583 ORTHO05D005469 3.7e-06 57.4 62 51.6


User provided reference genes

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