Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 3883.2 1956 100.0
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 3427.5 1957 88.9
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 3396.7 1957 88.0
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 3320.0 1980 85.9
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 3186.0 1957 83.0
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 3157.1 1970 81.9
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 3117.4 1962 80.1
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 3093.5 1973 79.5
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 3055.8 1967 79.3
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 3038.4 1966 78.8
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2942.9 2106 73.6
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2878.6 1943 76.9
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2547.3 1982 67.1
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2520.7 1986 66.1
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2508.4 2002 66.2
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2397.9 1907 66.2
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2393.2 1989 63.6
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2380.1 1998 63.2
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2373.2 1949 63.7
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2365.9 1982 62.1
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2364.3 1973 63.5
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2360.1 2001 63.0
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2348.5 2001 62.9
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2345.9 1994 62.7
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2324.7 2011 62.2
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2310.4 1989 62.2
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2309.6 1922 63.6
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2308.5 1999 62.0
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2308.5 2070 59.8
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2301.2 1993 61.4
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2295.8 2002 61.7
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2252.2 1988 60.6
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2242.6 1982 60.5
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2236.1 1877 62.6
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2225.7 1926 61.8
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 2216.4 2005 59.6
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2212.2 1895 61.0
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2211.0 2073 57.4
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2201.8 1903 62.4
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2180.2 1947 60.0
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2146.3 1944 59.4
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2133.2 1961 57.8
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2119.0 1957 57.6
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2110.5 1915 58.3
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2087.8 1867 60.4
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2080.8 1946 57.3
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 2054.3 2066 54.5
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2040.4 2000 55.5
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2037.7 2038 54.3
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2036.9 1993 56.1
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2035.4 1949 56.5
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2031.1 2015 55.2
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2028.4 1960 56.5
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2025.8 2007 55.7
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2004.2 1948 55.9
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1993.8 1924 56.2
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1985.7 1943 55.5
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1981.5 1935 56.1
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1974.9 1917 55.9
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1973.4 1899 56.4
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1967.2 1903 56.5
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1959.9 1970 53.7
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1959.9 1918 55.9
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1958.3 1952 54.5
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1956.4 1943 54.8
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1955.6 1921 55.5
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1951.8 1871 56.4
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1944.5 2109 51.2
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1942.2 1918 55.9
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1940.6 1934 54.6
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1931.0 1952 54.9
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1925.2 1944 55.1
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1923.7 1976 54.0
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1911.3 1972 53.9
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1910.2 1920 54.6
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1908.3 1899 54.9
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1908.3 1944 54.1
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1890.5 1947 54.1
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1880.5 1955 52.7
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1859.0 1938 53.3
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1803.5 1931 53.0
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1783.1 2147 48.5
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1626.7 1607 55.9
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1615.5 1545 57.3
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1535.4 1351 61.7
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1524.6 1766 48.8
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1475.7 1950 45.3
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1354.7 1084 64.5
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1191.4 2170 37.2
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1181.8 1937 39.0
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1150.6 2171 36.2
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1142.5 761 79.9
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 0.0e+00 1078.2 2099 35.2
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 1.7e-296 1023.8 743 74.3
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.3e-293 1014.2 793 66.3
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 7.4e-236 822.4 774 59.6
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 7.7e-233 812.4 1171 42.1
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 1.7e-232 811.2 714 59.9
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 4.2e-231 806.6 1391 38.8
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.6e-230 804.7 799 56.2
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 1.5e-215 755.0 2109 30.6
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 5.0e-176 623.6 797 46.9
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 8.2e-118 430.3 404 54.0
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 2.8e-110 405.2 358 55.9
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 2.0e-100 372.5 220 85.0
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.2e-84 320.1 189 83.6
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 2.1e-81 309.3 498 40.2
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 1.6e-60 240.0 267 48.7
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 3.0e-59 235.7 217 55.8
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 1.5e-55 223.4 314 45.5
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 5.8e-55 221.5 124 84.7
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 4.9e-54 218.4 269 45.0
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 3.0e-43 182.6 265 43.8
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 3.8e-38 165.6 198 47.5
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 1.8e-32 146.7 122 64.8
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 2.2e-30 139.8 128 53.9
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 2.9e-30 139.4 80 86.2
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 2.7e-28 132.9 94 72.3
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 4.6e-28 132.1 146 52.7
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 1.9e-21 110.2 121 54.5
Psat3g171600 Pisum sativum HOM05D006132 ORTHO05D007305 5.5e-21 108.6 87 71.3
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 2.1e-20 106.7 83 68.7
Psat6g116480 Pisum sativum HOM05D006132 ORTHO05D007305 2.7e-20 106.3 99 58.6
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 3.9e-19 102.4 133 47.4
Psat2g121560 Pisum sativum HOM05D006816 ORTHO05D008666 1.1e-16 94.4 73 65.8
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 7.6e-15 88.2 61 65.6
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 7.6e-15 88.2 58 72.4
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 1.0e-14 87.8 68 61.8
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.8e-11 77.0 69 50.7
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 1.4e-08 67.4 312 25.0


User provided reference genes

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