Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 0.0e+00 1124.8 560 100.0
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 8.4e-302 1039.6 560 91.8
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 9.0e-296 1019.6 561 89.8
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 1.8e-291 1005.4 560 88.9
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 1.7e-289 998.8 558 88.4
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 2.9e-286 988.0 560 86.1
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 4.2e-285 984.2 558 86.9
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 1.8e-283 978.8 561 84.5
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 2.5e-277 958.4 559 83.9
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 2.1e-276 955.3 559 83.7
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 3.6e-268 927.9 560 81.6
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 2.8e-265 918.3 558 80.1
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 6.3e-265 917.1 558 80.6
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.4e-264 916.0 558 80.1
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 5.4e-264 914.1 558 80.8
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 9.1e-264 913.3 558 79.9
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.6e-263 912.5 558 79.7
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 3.5e-263 911.4 558 80.3
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 1.7e-262 909.1 558 80.6
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 1.5e-261 906.0 568 78.3
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 3.6e-260 901.4 557 78.5
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 1.8e-259 899.0 560 79.5
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 1.8e-259 899.0 556 77.9
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.8e-259 899.0 559 77.5
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 3.0e-259 898.3 558 77.1
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 3.0e-259 898.3 551 79.7
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 8.8e-259 896.7 560 78.4
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 7.5e-258 893.6 559 76.9
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 1.7e-257 892.5 560 77.5
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 2.2e-257 892.1 554 78.7
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 1.8e-256 889.0 558 76.9
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 7.0e-256 887.1 560 76.8
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 2.7e-255 885.2 560 77.0
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 5.9e-255 884.0 560 76.2
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.9e-254 881.7 575 75.1
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 3.8e-254 881.3 558 76.7
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 3.8e-254 881.3 558 76.3
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 6.6e-254 880.6 560 75.2
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 8.6e-254 880.2 558 76.3
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 1.5e-253 879.4 560 77.0
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.9e-253 879.0 558 76.3
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 3.3e-253 878.2 558 76.7
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 7.3e-253 877.1 559 76.6
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 3.6e-252 874.8 558 78.5
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 1.8e-251 872.5 556 75.4
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 3.0e-251 871.7 558 74.7
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 5.2e-251 870.9 561 75.8
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 5.2e-251 870.9 558 75.8
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 4.4e-250 867.8 538 77.9
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 5.7e-250 867.5 556 75.2
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 5.7e-250 867.5 558 74.9
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 5.7e-250 867.5 558 74.6
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 7.5e-250 867.1 558 74.6
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 7.5e-250 867.1 577 73.7
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 1.1e-248 863.2 558 76.2
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 1.8e-248 862.4 558 75.8
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 5.4e-248 860.9 558 74.6
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 1.6e-247 859.4 557 74.9
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 2.7e-247 858.6 558 74.2
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 3.5e-247 858.2 557 74.9
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 4.6e-247 857.8 559 75.0
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 5.9e-247 857.4 557 74.3
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.0e-246 856.7 557 74.1
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.0e-246 856.7 557 74.1
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.0e-246 856.7 557 74.1
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 1.7e-246 855.9 558 73.7
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 3.3e-245 851.7 557 73.8
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 9.5e-245 850.1 565 73.1
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 2.1e-244 849.0 528 79.4
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 2.1e-244 849.0 558 73.1
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 1.4e-243 846.3 557 73.2
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 2.3e-243 845.5 558 74.2
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 5.2e-243 844.3 560 72.5
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 8.9e-243 843.6 558 73.5
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 8.9e-243 843.6 558 73.7
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 8.3e-241 837.0 542 74.9
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 3.2e-240 835.1 557 72.7
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 4.1e-240 834.7 576 71.2
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 9.2e-240 833.6 533 76.2
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.0e-239 832.4 585 70.3
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 4.6e-239 831.2 570 72.5
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 4.6e-239 831.2 553 71.8
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 2.3e-238 828.9 515 77.7
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 3.9e-238 828.2 563 72.1
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 3.9e-238 828.2 559 72.6
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 6.6e-238 827.4 560 72.9
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 8.6e-238 827.0 558 71.7
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 2.5e-237 825.5 558 72.0
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 4.3e-237 824.7 563 71.6
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 2.8e-236 822.0 575 70.3
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 2.8e-236 822.0 539 73.8
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 3.6e-236 821.6 543 73.3
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 4.0e-235 818.1 558 71.5
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 2.0e-234 815.8 559 71.6
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 2.6e-234 815.5 553 71.6
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 9.8e-234 813.5 558 71.0
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 8.3e-233 810.4 571 72.5
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 7.1e-232 807.4 560 70.4
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 1.2e-231 806.6 560 70.7
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.3e-230 803.1 603 68.0
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.1e-229 800.0 554 70.8
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 1.1e-229 800.0 558 69.2
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 4.7e-228 794.7 559 69.9
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 7.1e-224 780.8 554 69.9
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 1.2e-223 780.0 550 68.4
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.1e-223 779.2 601 66.1
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 1.7e-222 776.2 489 77.3
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.1e-221 773.5 555 68.8
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 2.8e-220 768.8 563 68.0
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 2.8e-220 768.8 541 69.3
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 1.5e-218 763.1 558 66.3
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 1.3e-214 750.0 391 93.6
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 6.6e-214 747.7 558 67.4
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.5e-213 746.5 561 67.0
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.8e-211 739.6 489 72.8
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.0e-210 736.1 543 68.1
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.0e-206 723.8 559 63.1
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.6e-204 716.5 544 67.1
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 3.4e-202 708.8 557 60.3
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 2.4e-200 702.6 448 75.4
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.3e-197 692.2 564 63.1
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 3.7e-180 635.6 546 56.2
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.9e-177 625.9 551 54.3
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.1e-175 619.8 434 70.0
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 2.1e-175 619.8 391 77.0
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 3.2e-168 595.9 562 55.2
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 6.7e-166 588.2 391 72.4
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 1.2e-162 577.4 550 52.9
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.7e-154 549.7 487 54.4
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 4.4e-149 532.3 322 79.5
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.4e-139 500.7 291 81.4
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 1.0e-134 484.6 321 72.3
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 8.9e-134 481.5 308 76.3
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 7.8e-130 468.4 322 69.6
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.5e-128 463.4 336 67.9
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 1.0e-121 441.4 269 79.2
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 5.4e-115 419.1 292 68.5
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 1.1e-110 404.8 274 71.2
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 9.0e-102 375.2 245 73.9
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 4.4e-101 372.9 240 79.2
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 6.0e-98 362.5 238 73.9
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 5.4e-91 339.3 267 63.7
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 1.3e-79 301.6 263 58.2
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 8.5e-52 209.1 138 73.9
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.6e-50 204.9 137 71.5
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.1e-50 204.5 139 71.2
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.7e-50 204.1 139 70.5
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 1.3e-47 195.3 140 68.6
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 8.2e-47 192.6 180 57.2
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 7.0e-46 189.5 128 72.7
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 4.7e-34 150.2 98 71.4
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 5.7e-32 143.3 116 58.6
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 1.2e-24 119.0 106 60.4
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 1.6e-21 108.6 63 77.8
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 2.0e-21 108.2 71 67.6
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 2.7e-21 107.8 63 76.2
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 1.7e-20 105.1 63 74.6
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.2e-18 99.0 63 73.0
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.6e-18 97.4 63 71.4
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 4.0e-17 94.0 73 58.9
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 4.0e-17 94.0 57 68.4
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 1.3e-15 89.0 246 25.6
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 1.7e-15 88.6 504 24.0
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 2.4e-14 84.7 54 72.2
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 1.7e-12 78.6 434 24.0
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 8.0e-10 69.7 54 53.7
Thecc.03G047200 Theobroma cacao HOM05D000075 ORTHO05D408647 1.3e-07 62.4 64 62.5


User provided reference genes

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