Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15539_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 4.4e-75 286.6 224 100.0
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 2.9e-18 97.8 242 61.6
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 6.5e-18 96.7 239 61.1
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 1.4e-17 95.5 239 61.1
Psat5g018720 Pisum sativum HOM05D006739 ORTHO05D008402 1.4e-17 95.5 137 48.2
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 3.6e-16 90.9 241 60.2
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 2.0e-14 85.1 90 47.8
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 2.0e-14 85.1 157 40.1
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 3.3e-14 84.3 90 46.7
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 1.3e-13 82.4 176 62.5
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 3.7e-13 80.9 174 66.1
TPR.G12357 Trifolium pratense HOM05D006739 ORTHO05D008402 3.7e-13 80.9 135 44.4
TPR.G15758 Trifolium pratense HOM05D000069 ORTHO05D001849 3.7e-13 80.9 139 43.9
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 8.2e-13 79.7 88 50.0
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 8.2e-13 79.7 144 37.5
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 1.8e-12 78.6 70 55.7
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 3.1e-12 77.8 174 67.2
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 3.1e-12 77.8 140 79.3
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 3.1e-12 77.8 88 50.0
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 4.1e-12 77.4 182 66.5
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 4.1e-12 77.4 234 51.3
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 5.3e-12 77.0 146 39.0
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 7.0e-12 76.6 85 50.6
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 7.0e-12 76.6 59 55.9
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 1.2e-11 75.9 155 34.8
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 1.2e-11 75.9 76 52.6
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 2.0e-11 75.1 156 72.4
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 2.6e-11 74.7 76 48.7
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 2.6e-11 74.7 94 43.6
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 2.6e-11 74.7 140 40.7
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 4.5e-11 73.9 161 69.6
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 4.5e-11 73.9 161 70.8
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 4.5e-11 73.9 170 61.2
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 5.9e-11 73.6 94 43.6
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 5.9e-11 73.6 94 42.6
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 5.9e-11 73.6 73 49.3
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 5.9e-11 73.6 83 47.0
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 5.9e-11 73.6 90 44.4
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 5.9e-11 73.6 90 44.4
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 7.7e-11 73.2 128 42.2
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 1.0e-10 72.8 73 49.3
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 1.0e-10 72.8 53 58.5
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 1.3e-10 72.4 158 38.0
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 1.7e-10 72.0 70 45.7
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 1.7e-10 72.0 90 43.3
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 3.8e-10 70.9 137 34.3
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 3.8e-10 70.9 52 57.7
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 3.8e-10 70.9 52 57.7
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 3.8e-10 70.9 52 57.7
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 5.0e-10 70.5 88 46.6
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 5.0e-10 70.5 51 58.8
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 6.5e-10 70.1 176 65.3
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 8.5e-10 69.7 53 54.7
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 1.1e-09 69.3 90 45.6
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 1.5e-09 68.9 146 38.4
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 1.9e-09 68.6 91 45.1
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 2.5e-09 68.2 170 64.7
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 2.5e-09 68.2 177 63.3
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 3.2e-09 67.8 84 42.9
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 4.2e-09 67.4 89 42.7
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 5.5e-09 67.0 51 58.8
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 7.2e-09 66.6 148 35.1
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 1.2e-08 65.9 150 36.7
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 1.2e-08 65.9 82 50.0
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 1.6e-08 65.5 186 60.2
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 1.6e-08 65.5 119 37.8
vmacro04630 Vaccinium macrocarpon HOM05D006739 ORTHO05D008402 1.6e-08 65.5 160 33.8
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 2.1e-08 65.1 164 67.1
Glyma.14G184200 Glycine max HOM05D006739 ORTHO05D008402 2.7e-08 64.7 177 59.9
Phvul.008G184000 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 2.7e-08 64.7 75 46.7
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 4.7e-08 63.9 42 64.3
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 6.1e-08 63.5 139 36.0
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 6.1e-08 63.5 57 52.6
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 8.0e-08 63.2 64 45.3
VMungo0647G0534 Vigna mungo HOM05D006739 ORTHO05D008402 1.0e-07 62.8 75 42.7
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 1.4e-07 62.4 64 45.3
Ah.05g171720 Amaranthus hybridus HOM05D006739 ORTHO05D008402 2.3e-07 61.6 136 73.5
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 2.3e-07 61.6 72 43.1
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 4.0e-07 60.8 173 39.3
SGA_v2.0_scaffold123G33426 Striga asiatica HOM05D006739 ORTHO05D008402 4.0e-07 60.8 135 33.3
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 5.2e-07 60.5 43 60.5
Glyma.02G216900 Glycine max HOM05D006739 ORTHO05D008402 5.2e-07 60.5 87 42.5
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 6.7e-07 60.1 85 43.5
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 8.8e-07 59.7 244 50.8
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 8.8e-07 59.7 88 42.0
Gohir.A06G030375 Gossypium hirsutum HOM05D006739 ORTHO05D008402 1.1e-06 59.3 82 43.9
Thecc.08G075400 Theobroma cacao HOM05D006739 ORTHO05D008402 1.1e-06 59.3 248 51.6
Gohir.D06G029600 Gossypium hirsutum HOM05D006739 ORTHO05D008402 2.6e-06 58.2 82 42.7
Gorai.010G032500 Gossypium raimondii HOM05D006739 ORTHO05D008402 2.6e-06 58.2 82 42.7
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 3.3e-06 57.8 144 46.5
DCAR_012846 Daucus carota HOM05D006739 ORTHO05D008402 3.3e-06 57.8 53 47.2
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 4.4e-06 57.4 48 54.2
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 5.7e-06 57.0 173 26.6
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 5.7e-06 57.0 83 43.4
CDE07G2071 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 9.7e-06 56.2 155 34.8
Hund26853 Selenicereus undatus HOM05D006739 ORTHO05D008402 9.7e-06 56.2 62 48.4
TAR381G0861 Trochodendron aralioides HOM05D006739 ORTHO05D008402 9.7e-06 56.2 103 31.1


User provided reference genes

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