Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.8e-94 349.4 187 100.0
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.8e-94 349.4 187 100.0
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 3.6e-71 271.9 189 79.4
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 2.9e-65 252.3 225 68.9
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 9.4e-64 247.3 201 71.1
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 5.7e-61 238.0 173 78.0
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 1.3e-60 236.9 186 69.4
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 2.8e-60 235.7 171 76.0
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 2.4e-59 232.6 175 74.9
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 4.1e-59 231.9 179 72.6
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 2.6e-58 229.2 189 65.6
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 9.1e-43 177.6 196 56.1
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 3.6e-39 165.6 206 50.5
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 1.4e-38 163.7 221 48.0
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 6.8e-38 161.4 210 47.1
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 6.8e-38 161.4 222 48.2
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 2.0e-37 159.8 202 48.0
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 3.4e-37 159.1 182 52.7
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 3.4e-37 159.1 217 47.0
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 4.4e-37 158.7 191 47.1
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 4.4e-37 158.7 176 52.8
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 7.5e-37 157.9 203 47.8
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 9.8e-37 157.5 217 46.1
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 9.8e-37 157.5 176 53.4
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 9.8e-37 157.5 210 46.2
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 9.8e-37 157.5 191 52.4
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 1.7e-36 156.8 201 48.3
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 1.7e-36 156.8 201 48.3
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 1.7e-36 156.8 201 48.3
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 2.2e-36 156.4 210 47.1
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 2.2e-36 156.4 201 49.3
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 2.9e-36 156.0 207 47.8
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 2.9e-36 156.0 176 52.8
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 3.7e-36 155.6 176 52.8
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 3.7e-36 155.6 176 52.8
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 4.9e-36 155.2 208 47.6
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 4.9e-36 155.2 179 51.4
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 4.9e-36 155.2 221 48.4
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 4.9e-36 155.2 208 49.0
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 8.3e-36 154.5 176 52.3
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 1.1e-35 154.1 208 47.6
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 1.1e-35 154.1 200 48.5
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 1.4e-35 153.7 205 47.3
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 1.8e-35 153.3 209 46.9
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 2.4e-35 152.9 208 46.2
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 3.2e-35 152.5 206 48.5
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 3.2e-35 152.5 192 46.4
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 5.4e-35 151.8 183 50.3
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 5.4e-35 151.8 196 48.0
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 5.4e-35 151.8 208 44.7
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 7.0e-35 151.4 201 47.8
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 7.0e-35 151.4 212 43.4
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 9.2e-35 151.0 202 46.5
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 9.2e-35 151.0 214 47.7
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 1.2e-34 150.6 204 49.0
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 1.2e-34 150.6 176 51.1
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 1.2e-34 150.6 193 47.2
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 1.6e-34 150.2 214 43.9
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 2.0e-34 149.8 210 44.3
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 2.7e-34 149.4 210 46.2
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 2.7e-34 149.4 216 47.7
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 3.5e-34 149.1 210 44.3
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 7.8e-34 147.9 209 46.9
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 1.0e-33 147.5 196 48.0
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 1.0e-33 147.5 196 46.4
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 1.3e-33 147.1 180 50.0
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 2.3e-33 146.4 212 42.0
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 2.3e-33 146.4 210 46.2
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 3.0e-33 146.0 194 45.9
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 3.9e-33 145.6 178 49.4
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 5.0e-33 145.2 204 45.6
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 5.0e-33 145.2 203 46.8
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 5.0e-33 145.2 213 43.7
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 6.6e-33 144.8 138 59.4
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 8.6e-33 144.4 200 47.0
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 8.6e-33 144.4 190 46.8
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 1.1e-32 144.1 205 45.4
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 1.1e-32 144.1 195 45.1
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 1.9e-32 143.3 190 46.3
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 2.5e-32 142.9 193 47.7
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 2.5e-32 142.9 195 45.6
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 2.5e-32 142.9 216 44.0
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 5.6e-32 141.7 211 44.1
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 5.6e-32 141.7 189 48.1
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 7.3e-32 141.4 202 45.0
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 7.3e-32 141.4 200 46.0
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 7.3e-32 141.4 189 46.0
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 7.3e-32 141.4 202 46.5
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 9.5e-32 141.0 207 45.4
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 1.2e-31 140.6 188 45.7
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 1.2e-31 140.6 200 44.0
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 1.6e-31 140.2 108 69.4
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 2.1e-31 139.8 190 45.3
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 2.8e-31 139.4 187 45.5
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 4.7e-31 138.7 212 44.3
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 4.7e-31 138.7 178 48.3
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 6.2e-31 138.3 189 46.0
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 1.0e-30 137.5 218 41.3
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 6.8e-30 134.8 184 46.7
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 8.9e-30 134.4 188 48.4
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 1.5e-29 133.7 174 47.7
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 2.0e-29 133.3 169 48.5
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 4.4e-29 132.1 196 44.9
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 7.5e-29 131.3 242 38.4
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 1.3e-28 130.6 218 39.9
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 2.2e-28 129.8 164 46.3
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 2.9e-28 129.4 215 40.0
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 3.7e-28 129.0 166 50.0
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 4.9e-28 128.6 168 49.4
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 8.3e-28 127.9 192 44.8
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 4.6e-18 95.5 125 46.4
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 1.0e-17 94.4 159 43.4
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 9.5e-16 87.8 99 50.5
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 2.3e-14 83.2 292 30.1
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.2e-13 80.9 85 52.9
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 2.0e-13 80.1 192 35.9
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 2.0e-13 80.1 77 55.8
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 3.4e-13 79.3 109 45.0
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 2.9e-12 76.3 195 30.3
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 1.5e-08 63.9 208 29.3
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.2e-07 60.8 59 52.5
TPR.G38169 Trifolium pratense HOM05D006240 ORTHO05D007709 3.6e-07 59.3 115 41.7
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 6.2e-07 58.5 51 51.0
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.8e-06 57.0 73 37.0


User provided reference genes

Program Settings