Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 4.6e-74 281.2 147 100.0
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 6.5e-68 260.8 149 91.3
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 9.3e-67 256.9 147 90.5
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 1.3e-65 253.1 147 88.4
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 3.9e-65 251.5 147 87.8
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 5.7e-64 247.7 147 87.1
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 1.2e-61 240.0 145 83.4
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 5.9e-61 237.7 139 87.1
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 6.5e-60 234.2 147 85.7
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 7.2e-59 230.7 147 83.0
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 9.4e-59 230.3 147 84.4
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 2.1e-58 229.2 147 82.3
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 2.7e-58 228.8 147 78.2
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 3.0e-57 225.3 147 81.0
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 5.1e-57 224.6 145 82.1
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 5.1e-57 224.6 147 78.9
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 6.7e-57 224.2 147 81.0
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 6.7e-57 224.2 147 81.0
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 6.7e-57 224.2 145 82.1
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 6.7e-57 224.2 145 82.1
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 8.8e-57 223.8 147 81.6
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 8.8e-57 223.8 147 79.6
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 8.8e-57 223.8 147 81.6
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 1.1e-56 223.4 147 79.6
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 1.5e-56 223.0 147 79.6
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 1.5e-56 223.0 145 81.4
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.5e-56 222.2 145 81.4
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 2.5e-56 222.2 147 80.3
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 3.3e-56 221.9 147 81.0
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 7.4e-56 220.7 147 78.9
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 9.7e-56 220.3 147 79.6
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 9.7e-56 220.3 147 77.6
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 1.7e-55 219.5 147 79.6
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 2.2e-55 219.2 147 80.3
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 2.2e-55 219.2 147 76.9
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 3.7e-55 218.4 148 79.7
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 3.7e-55 218.4 148 79.7
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 3.7e-55 218.4 146 80.8
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 4.8e-55 218.0 147 81.0
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 1.1e-54 216.9 147 78.2
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.8e-54 216.1 147 76.9
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.8e-54 216.1 147 76.9
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 2.4e-54 215.7 147 78.9
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.4e-54 215.7 147 76.9
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 2.4e-54 215.7 148 78.4
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 3.1e-54 215.3 144 76.4
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 5.3e-54 214.5 147 78.2
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 5.3e-54 214.5 147 74.8
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 9.1e-54 213.8 147 78.2
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 1.2e-53 213.4 147 76.9
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 1.2e-53 213.4 147 76.9
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 3.4e-53 211.8 147 77.6
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 3.4e-53 211.8 145 77.2
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 3.4e-53 211.8 147 75.5
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 3.4e-53 211.8 147 75.5
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 1.3e-52 209.9 149 75.2
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 1.7e-52 209.5 147 78.2
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 2.2e-52 209.1 147 76.9
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 2.2e-52 209.1 147 76.9
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 2.2e-52 209.1 147 76.9
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 2.9e-52 208.8 147 76.9
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 3.8e-52 208.4 147 76.2
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 6.5e-52 207.6 147 74.1
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 8.5e-52 207.2 147 78.2
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 1.1e-51 206.8 147 76.2
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 1.1e-51 206.8 147 76.2
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 1.4e-51 206.5 147 76.2
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 1.9e-51 206.1 150 74.0
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.9e-51 206.1 147 76.2
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 3.2e-51 205.3 149 75.8
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 4.2e-51 204.9 149 76.5
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 4.2e-51 204.9 149 73.8
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 7.2e-51 204.1 155 72.9
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 7.2e-51 204.1 147 74.8
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.6e-50 203.0 147 72.1
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 3.6e-50 201.8 147 75.5
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 6.1e-50 201.1 147 74.8
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 7.9e-50 200.7 149 74.5
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 7.9e-50 200.7 149 72.5
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 1.0e-49 200.3 148 76.4
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 3.0e-49 198.7 147 70.1
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 2.0e-48 196.1 147 72.8
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 9.7e-48 193.7 147 70.1
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 1.3e-47 193.4 140 76.4
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.8e-47 192.2 147 70.7
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.8e-47 191.4 150 69.3
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.8e-47 191.4 150 69.3
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.1e-46 190.3 147 70.1
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.1e-46 188.7 147 70.1
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.5e-45 186.4 150 72.0
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.5e-45 186.4 152 71.1
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 2.0e-45 186.0 149 67.8
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 1.0e-44 183.7 151 68.2
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 1.7e-44 183.0 150 66.7
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 5.0e-44 181.4 152 65.8
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 8.5e-44 180.6 152 66.4
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 9.4e-43 177.2 153 64.7
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 2.7e-42 175.6 115 78.3
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 4.7e-42 174.9 156 64.7
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 6.1e-42 174.5 154 64.3
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 8.0e-42 174.1 147 63.9
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.0e-41 173.7 147 63.9
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 1.0e-41 173.7 158 62.7
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 1.8e-41 172.9 155 62.6
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 2.3e-41 172.6 155 63.2
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 2.2e-39 166.0 149 63.1
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.4e-38 163.3 109 78.0
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 2.4e-38 162.5 113 80.5
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 3.1e-38 162.2 161 57.1
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 5.3e-38 161.4 139 63.3
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 5.3e-38 161.4 139 63.3
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 4.5e-37 158.3 149 59.7
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 3.8e-36 155.2 100 80.0
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 5.0e-36 154.8 151 60.3
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.1e-35 153.7 105 74.3
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 3.7e-31 138.7 145 58.6
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 8.2e-31 137.5 132 59.1
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 1.8e-30 136.3 96 76.0
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 2.4e-30 136.0 140 60.0
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 7.0e-30 134.4 147 55.1
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 3.8e-28 128.6 103 68.9
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 3.8e-28 128.6 103 68.9
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 3.8e-28 128.6 153 50.3
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 2.5e-27 125.9 135 52.6
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 8.8e-25 117.5 85 69.4
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 2.6e-24 115.9 152 46.7
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 1.6e-21 106.7 78 73.1
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 8.6e-20 100.9 145 47.6
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 8.6e-20 100.9 79 64.6
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 2.5e-19 99.4 166 44.6
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 3.6e-18 95.5 148 41.2
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 6.8e-17 91.3 79 60.8
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 3.4e-16 89.0 72 69.4
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 7.5e-16 87.8 79 53.2
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.1e-14 84.0 69 60.9
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.8e-14 83.2 69 60.9
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.4e-14 82.8 69 59.4
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 3.1e-14 82.4 71 57.7
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 3.1e-14 82.4 71 57.7
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 7.0e-14 81.3 69 56.5
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 7.0e-14 81.3 71 59.2
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 5.2e-09 65.1 125 40.8
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 1.2e-08 63.9 83 42.2
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.2e-08 63.9 72 45.8
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 2.9e-07 59.3 70 44.3
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 6.4e-07 58.2 72 43.1
HPP92_014777 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.1e-06 55.5 72 43.1


User provided reference genes

Program Settings