Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 6.1e-61 238.4 261 100.0
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 5.9e-48 195.3 261 91.6
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 1.7e-47 193.7 262 89.7
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 5.0e-47 192.2 261 90.4
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 5.0e-47 192.2 261 90.4
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 8.5e-47 191.4 262 89.3
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 1.1e-46 191.0 262 89.3
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 4.2e-46 189.1 259 90.3
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 5.5e-46 188.7 260 88.8
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 7.2e-46 188.3 264 90.5
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 1.2e-45 187.6 261 88.1
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 1.6e-45 187.2 264 90.5
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 3.6e-45 186.0 265 89.1
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 1.5e-43 180.6 263 89.4
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 4.4e-43 179.1 262 88.5
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 6.3e-42 175.3 264 84.5
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 2.4e-41 173.3 259 85.3
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 2.4e-41 173.3 264 83.0
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 5.4e-41 172.2 262 86.3
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 7.0e-41 171.8 279 83.5
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 5.9e-40 168.7 261 82.0
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.3e-39 167.5 266 83.8
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 1.3e-39 167.5 262 82.4
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 1.7e-39 167.2 259 59.8
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 3.8e-39 166.0 259 84.9
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 5.0e-39 165.6 263 82.9
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 5.0e-39 165.6 259 67.2
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 8.6e-39 164.9 264 85.6
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 1.9e-38 163.7 263 85.2
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 2.5e-38 163.3 265 72.5
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 1.6e-37 160.6 263 76.8
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 3.6e-37 159.5 263 82.1
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 9.8e-35 151.4 242 80.6
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.8e-33 147.1 263 78.3
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 5.9e-32 142.1 249 81.5
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 1.3e-31 141.0 263 80.2
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 1.3e-31 141.0 261 77.0
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 8.6e-31 138.3 244 81.6
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.4e-28 131.0 261 76.2
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.4e-28 131.0 261 78.5
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 2.3e-28 130.2 257 74.3
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 2.3e-28 130.2 263 76.8
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 2.6e-27 126.7 261 74.7
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 3.4e-27 126.3 241 73.0
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 2.2e-26 123.6 220 86.4
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 6.4e-26 122.1 244 78.3
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.1e-25 121.3 249 79.9
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 3.2e-25 119.8 268 78.4
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.2e-25 119.8 246 77.6
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 5.4e-25 119.0 264 76.1
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 2.0e-24 117.1 251 78.9
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.0e-24 117.1 251 78.9
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.5e-24 116.3 249 79.5
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.6e-24 115.9 252 78.2
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 6.0e-24 115.5 247 76.5
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 6.0e-24 115.5 265 69.1
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 7.8e-24 115.2 262 76.0
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 1.0e-23 114.8 65 96.9
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 1.1e-22 111.3 262 70.6
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 4.3e-22 109.4 269 67.3
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 7.3e-22 108.6 261 72.4
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 7.3e-22 108.6 243 76.5
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 1.2e-21 107.8 270 68.5
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 1.6e-21 107.5 271 68.3
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 2.1e-21 107.1 239 76.2
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 3.6e-21 106.3 247 74.1
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.1e-20 104.8 213 60.6
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 1.1e-20 104.8 247 74.1
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 3.1e-20 103.2 261 67.8
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 8.9e-20 101.7 261 71.3
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 7.5e-19 98.6 266 75.9
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 3.7e-18 96.3 246 72.4
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 4.9e-18 95.9 247 72.1
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 6.4e-18 95.5 240 73.3
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 8.3e-18 95.1 261 71.3
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 2.4e-17 93.6 243 72.4
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 5.4e-17 92.4 220 77.3
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 9.2e-17 91.7 247 72.1
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.2e-16 91.3 246 72.4
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 1.2e-16 91.3 243 77.0
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 2.7e-16 90.1 65 75.4
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 2.7e-16 90.1 255 63.5
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.7e-15 87.4 261 72.0
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 6.6e-15 85.5 50 74.0
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 4.3e-14 82.8 71 70.4
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 9.5e-14 81.6 51 72.5
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 9.5e-14 81.6 217 72.4
Nn5g29212 Nelumbo nucifera HOM05D004463 ORTHO05D004724 1.2e-13 81.3 143 81.1
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 1.6e-13 80.9 228 74.1
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.1e-13 80.5 64 65.6
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 3.6e-13 79.7 249 69.9
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 3.6e-13 79.7 47 76.6
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 4.7e-13 79.3 50 70.0
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 8.1e-13 78.6 246 71.5
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 1.1e-12 78.2 50 70.0
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 2.3e-12 77.0 50 70.0
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 3.1e-12 76.6 51 62.7
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 3.1e-12 76.6 244 70.1
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 4.0e-12 76.3 220 77.3
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 4.0e-12 76.3 51 68.6
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 1.2e-11 74.7 47 72.3
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.5e-11 74.3 44 72.7
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 2.6e-11 73.6 65 53.8
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 3.4e-11 73.2 48 68.8
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 3.4e-11 73.2 50 64.0
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 3.4e-11 73.2 51 66.7
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 5.8e-11 72.4 52 63.5
Zm00001eb022680 Zea mays HOM05D004463 ORTHO05D004724 1.3e-10 71.2 262 65.6
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 2.9e-10 70.1 56 60.7
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.9e-10 70.1 51 62.7
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 4.9e-10 69.3 52 59.6
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 4.9e-10 69.3 52 59.6
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 6.4e-10 68.9 49 59.2
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 6.4e-10 68.9 335 57.0
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 6.4e-10 68.9 49 59.2
Lj9P382T32 Lonicera japonica HOM05D004463 ORTHO05D004724 6.4e-10 68.9 136 77.2
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 1.4e-09 67.8 51 58.8
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 1.9e-09 67.4 56 57.1
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 3.2e-09 66.6 51 62.7
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 4.1e-09 66.2 54 63.0
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 7.1e-09 65.5 47 63.8
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 9.2e-09 65.1 58 55.2
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 1.6e-08 64.3 53 60.4
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 1.6e-08 64.3 50 60.0
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 2.1e-08 63.9 51 56.9
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 2.1e-08 63.9 224 72.3
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 2.1e-08 63.9 47 61.7
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 2.7e-08 63.5 52 55.8
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 4.6e-08 62.8 51 60.8
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 4.6e-08 62.8 43 65.1
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 7.8e-08 62.0 52 53.8
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 7.8e-08 62.0 51 58.8
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 1.7e-07 60.8 51 56.9
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 2.3e-07 60.5 51 56.9
AUR62010398 Chenopodium quinoa HOM05D004463 ORTHO05D004724 3.0e-07 60.1 109 88.1
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 3.0e-07 60.1 51 56.9
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.9e-07 59.7 51 56.9
Peaxi162Scf00684g00132 Petunia axillaris HOM05D004463 ORTHO05D004724 8.6e-07 58.5 50 72.0
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 1.1e-06 58.2 51 56.9
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.5e-06 57.8 42 61.9
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 1.5e-06 57.8 51 54.9
AUR62016820 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.9e-06 57.4 106 88.7
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 2.5e-06 57.0 49 55.1
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 2.5e-06 57.0 50 50.0
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 2.5e-06 57.0 48 56.2
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 3.3e-06 56.6 51 54.9
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 3.3e-06 56.6 51 54.9
Cfa005098 Carpinus fangiana HOM05D065658 ORTHO05D004724 5.6e-06 55.8 45 55.6
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 7.3e-06 55.5 34 73.5


User provided reference genes

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