Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 2.9e-63 245.0 117 100.0
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 9.7e-59 229.9 114 93.0
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 1.7e-58 229.2 114 94.7
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 2.8e-58 228.4 114 92.1
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 2.8e-58 228.4 114 92.1
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 4.8e-58 227.6 117 89.7
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 6.5e-55 217.2 114 87.7
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 8.5e-55 216.9 114 88.6
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 1.1e-54 216.5 114 86.8
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 4.2e-54 214.5 115 85.2
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 5.5e-54 214.2 114 86.0
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 1.2e-53 213.0 117 83.8
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 2.1e-53 212.2 114 85.1
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.1e-53 212.2 114 85.1
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 2.1e-53 212.2 116 83.6
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.7e-53 211.8 117 81.2
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 3.6e-53 211.5 114 84.2
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 3.6e-53 211.5 114 84.2
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 3.6e-53 211.5 114 85.1
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 4.7e-53 211.1 115 86.1
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 6.1e-53 210.7 114 83.3
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 6.1e-53 210.7 115 83.5
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 8.0e-53 210.3 117 81.2
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 3.0e-52 208.4 114 82.5
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.0e-52 208.4 113 83.2
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 3.0e-52 208.4 113 83.2
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 3.0e-52 208.4 112 85.7
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 5.2e-52 207.6 113 83.2
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.2e-52 207.6 113 83.2
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 5.2e-52 207.6 117 79.5
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 6.7e-52 207.2 114 82.5
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 6.7e-52 207.2 113 82.3
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 8.8e-52 206.8 114 82.5
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 8.8e-52 206.8 120 80.0
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.2e-51 206.5 114 81.6
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.2e-51 206.5 114 82.5
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 1.2e-51 206.5 114 82.5
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.0e-51 205.7 114 81.6
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 2.0e-51 205.7 114 81.6
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 2.6e-51 205.3 113 84.1
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.6e-51 205.3 113 82.3
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.3e-51 204.9 114 81.6
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 3.3e-51 204.9 113 82.3
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 4.4e-51 204.5 114 81.6
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 5.7e-51 204.1 113 84.1
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 1.3e-50 203.0 111 83.8
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 2.8e-50 201.8 116 81.0
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 6.3e-50 200.7 178 60.1
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 1.1e-49 199.9 111 79.3
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.1e-49 199.9 115 80.0
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.1e-49 199.9 111 82.9
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.4e-49 199.5 112 79.5
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.8e-49 199.1 111 82.9
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 2.4e-49 198.7 114 79.8
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 2.4e-49 198.7 114 80.7
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.4e-49 198.7 111 80.2
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 3.1e-49 198.4 116 79.3
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.1e-49 198.4 112 79.5
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 4.1e-49 198.0 117 77.8
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 5.3e-49 197.6 117 76.9
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 5.3e-49 197.6 112 78.6
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 7.0e-49 197.2 113 79.6
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 7.0e-49 197.2 110 81.8
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 9.1e-49 196.8 110 80.9
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 9.1e-49 196.8 117 77.8
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 1.6e-48 196.1 117 77.8
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 1.6e-48 196.1 112 78.6
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 2.0e-48 195.7 114 78.1
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 5.9e-48 194.1 110 79.1
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 77.9
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 77.9
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 77.9
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 77.9
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 78.8
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 7.7e-48 193.7 117 76.1
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 7.7e-48 193.7 112 77.7
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 1.0e-47 193.4 112 76.8
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.3e-47 193.0 115 79.1
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.3e-47 193.0 114 75.4
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.3e-47 193.0 114 75.4
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 1.7e-47 192.6 113 77.9
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 1.7e-47 192.6 113 77.0
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 2.2e-47 192.2 113 77.9
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 2.2e-47 192.2 113 77.0
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.2e-47 192.2 113 77.9
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 2.9e-47 191.8 113 77.0
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 2.9e-47 191.8 113 77.0
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 3.8e-47 191.4 113 77.0
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 3.8e-47 191.4 113 77.0
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 3.8e-47 191.4 133 68.4
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 5.0e-47 191.0 113 77.0
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 6.5e-47 190.7 113 77.0
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 6.5e-47 190.7 114 73.7
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 6.5e-47 190.7 112 76.8
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 8.5e-47 190.3 114 75.4
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 1.1e-46 189.9 111 77.5
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 1.9e-46 189.1 112 75.0
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 1.9e-46 189.1 113 75.2
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 1.9e-46 189.1 113 75.2
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 1.9e-46 189.1 113 75.2
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 3.2e-46 188.3 113 76.1
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 3.2e-46 188.3 113 77.9
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 1.6e-45 186.0 113 75.2
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 6.1e-45 184.1 109 76.1
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 8.8e-44 180.3 101 81.2
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.3e-42 176.4 116 67.2
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.7e-42 176.0 100 78.0
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 1.7e-42 176.0 101 79.2
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 2.8e-42 175.3 116 69.8
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 4.8e-42 174.5 116 69.8
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 6.3e-42 174.1 148 58.8
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 6.3e-42 174.1 98 81.6
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 6.3e-42 174.1 98 80.6
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.4e-41 172.9 105 74.3
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 4.1e-41 171.4 108 70.4
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 4.5e-40 167.9 102 74.5
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 5.9e-40 167.5 103 72.8
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 1.3e-39 166.4 104 74.0
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 6.6e-39 164.1 129 61.2
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 5.2e-36 154.5 113 61.9
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 6.8e-36 154.1 112 67.0
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 2.2e-34 149.1 88 78.4
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 2.4e-33 145.6 117 62.4
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 1.0e-31 140.2 113 53.1
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 2.3e-31 139.0 112 56.2
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 7.3e-30 134.0 82 75.6
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 8.0e-29 130.6 113 56.6
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 1.5e-27 126.3 60 93.3
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 9.8e-27 123.6 109 49.5
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 7.0e-25 117.5 112 46.4
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 3.5e-24 115.2 71 70.4
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 6.6e-23 110.9 58 79.3
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 9.5e-22 107.1 60 78.3
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.1e-21 105.9 81 65.4
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 8.0e-21 104.0 103 48.5
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 8.9e-20 100.5 99 49.5
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 1.5e-19 99.8 60 70.0
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 8.3e-18 94.0 96 45.8
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 5.4e-17 91.3 57 75.4
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 1.2e-16 90.1 80 58.8
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 2.7e-16 89.0 113 42.5
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 3.5e-16 88.6 80 50.0
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 3.0e-15 85.5 52 78.8
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 8.1e-13 77.4 55 70.9
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 4.0e-12 75.1 55 61.8
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 6.4e-10 67.8 46 63.0
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 8.3e-10 67.4 82 50.0
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 4.6e-08 61.6 109 32.1


User provided reference genes

Program Settings