Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15313_v3 Cicer arietinum L. HOM05D003468 ORTHO05D002806 8.6e-182 640.2 323 100.0
Psat5g003000 Pisum sativum HOM05D003468 ORTHO05D002806 5.8e-53 212.2 352 38.4
Ca_15309_v3 Cicer arietinum L. HOM05D003468 ORTHO05D002806 8.4e-44 181.8 267 44.6
Glyma.04G148800 Glycine max HOM05D003468 ORTHO05D002806 2.5e-32 143.7 193 46.1
Phvul.009G025400 Phaseolus vulgaris HOM05D003468 ORTHO05D002806 7.4e-32 142.1 232 38.8
VMungo1309G2250 Vigna mungo HOM05D003468 ORTHO05D002806 8.1e-31 138.7 220 40.9
Glyma.06G216400 Glycine max HOM05D003468 ORTHO05D002806 2.4e-30 137.1 225 40.9
Medtr3g116690 Medicago truncatula HOM05D003468 ORTHO05D002806 2.2e-28 130.6 343 30.0
Medtr3g117790 Medicago truncatula HOM05D003468 ORTHO05D002806 2.2e-28 130.6 343 30.0
Lj6g0007992 Lotus japonicus HOM05D003468 ORTHO05D002806 8.4e-28 128.6 238 35.7
Ah.04g159140 Amaranthus hybridus HOM05D003468 ORTHO05D002806 4.6e-26 122.9 232 34.1
Sc16g0010510 Simmondsia chinensis HOM05D003468 ORTHO05D002806 6.0e-26 122.5 191 38.7
Lj1g0000690 Lotus japonicus HOM05D003468 ORTHO05D002806 1.8e-25 120.9 263 30.4
AUR62000285 Chenopodium quinoa HOM05D003468 ORTHO05D002806 1.5e-24 117.9 203 36.5
Sed0021873 Sechium edule HOM05D003468 ORTHO05D002806 1.9e-24 117.5 211 36.0
Lalb_Chr15g0085871 Lupinus albus HOM05D003468 ORTHO05D002806 7.4e-24 115.5 193 37.8
AUR62006633 Chenopodium quinoa HOM05D003468 ORTHO05D002806 1.3e-23 114.8 203 37.4
TPR.G5928 Trifolium pratense HOM05D003468 ORTHO05D002806 1.6e-23 114.4 187 35.8
Lalb_Chr18g0054251 Lupinus albus HOM05D003468 ORTHO05D002806 4.8e-23 112.8 193 37.3
Sc09g0001380 Simmondsia chinensis HOM05D003468 ORTHO05D002806 4.8e-23 112.8 191 36.6
Psat5g148920 Pisum sativum HOM05D003468 ORTHO05D002806 6.2e-23 112.5 193 38.9
Ah.06g195340 Amaranthus hybridus HOM05D003468 ORTHO05D002806 3.1e-22 110.2 233 32.6
Ca_15053_v3 Cicer arietinum L. HOM05D003468 ORTHO05D002806 3.1e-22 110.2 193 37.8
RcHm_v2.0_Chr5g0000441 Rosa chinensis HOM05D003468 ORTHO05D002806 1.5e-21 107.8 216 34.3
Sed0014984 Sechium edule HOM05D003468 ORTHO05D002806 1.5e-21 107.8 218 35.3
RcHm_v2.0_Chr7g0218431 Rosa chinensis HOM05D003468 ORTHO05D002806 2.6e-21 107.1 196 35.7
TAR633G1116 Trochodendron aralioides HOM05D003468 ORTHO05D002806 2.6e-21 107.1 200 36.0
arahy.Tifrunner.gnm1.ann1.NCBN9K Arachis hypogaea HOM05D003468 ORTHO05D002806 4.5e-21 106.3 218 32.1
Lj6g0018146 Lotus japonicus HOM05D003468 ORTHO05D002806 4.5e-21 106.3 191 36.1
vmacro10619 Vaccinium macrocarpon HOM05D003468 ORTHO05D002806 4.5e-21 106.3 190 37.4
Eucgr.B00490 Eucalyptus grandis HOM05D003468 ORTHO05D002806 5.8e-21 105.9 191 34.6
Hund21917 Selenicereus undatus HOM05D003468 ORTHO05D002806 5.8e-21 105.9 191 36.6
arahy.Tifrunner.gnm1.ann1.596HBI Arachis hypogaea HOM05D003468 ORTHO05D002806 7.6e-21 105.5 197 34.0
arahy.Tifrunner.gnm1.ann1.UJZR4Z Arachis hypogaea HOM05D003468 ORTHO05D002806 7.6e-21 105.5 218 32.1
Medtr3g467090 Medicago truncatula HOM05D003468 ORTHO05D002806 1.7e-20 104.4 191 38.2
EL10Ac4g10009 Beta vulgaris HOM05D003468 ORTHO05D002806 2.2e-20 104.0 244 32.8
Lj2A1101T50 Lonicera japonica HOM05D003468 ORTHO05D002806 3.8e-20 103.2 190 33.7
arahy.Tifrunner.gnm1.ann1.DRQC3V Arachis hypogaea HOM05D003468 ORTHO05D002806 8.4e-20 102.1 218 31.7
Eucgr.B00647 Eucalyptus grandis HOM05D003468 ORTHO05D002806 8.4e-20 102.1 198 33.8
VMungo1309G0821 Vigna mungo HOM05D003468 ORTHO05D002806 8.4e-20 102.1 221 33.5
arahy.Tifrunner.gnm1.ann1.R24AWJ Arachis hypogaea HOM05D003468 ORTHO05D002806 2.5e-19 100.5 164 37.2
GSVIVG01024564001 Vitis vinifera HOM05D003468 ORTHO05D002806 2.5e-19 100.5 191 33.5
Glyma.11G186600 Glycine max HOM05D003468 ORTHO05D002806 3.2e-19 100.1 211 32.7
arahy.Tifrunner.gnm1.ann1.HB1RT4 Arachis hypogaea HOM05D003468 ORTHO05D002806 4.2e-19 99.8 216 32.4
CSS0029508 Camellia sinensis var. sinensis HOM05D003468 ORTHO05D002806 4.2e-19 99.8 223 33.2
ClCG02G019040 Citrullus lanatus HOM05D003468 ORTHO05D002806 4.2e-19 99.8 208 33.7
FAN04G1909 Fragaria x ananassa HOM05D003468 ORTHO05D002806 4.2e-19 99.8 189 33.9
Dinv28729 Davidia involucrata HOM05D003468 ORTHO05D002806 5.5e-19 99.4 195 34.9
QL01p024883 Quercus lobata HOM05D003468 ORTHO05D002806 5.5e-19 99.4 233 28.8
EL10Ac1g01349 Beta vulgaris HOM05D003468 ORTHO05D002806 7.1e-19 99.0 243 31.3
CsaV3_6G013110 Cucumis sativus L. HOM05D003468 ORTHO05D002806 7.1e-19 99.0 218 33.5
RcHm_v2.0_Chr5g0073101 Rosa chinensis HOM05D003468 ORTHO05D002806 7.1e-19 99.0 191 34.0
MELO3C026878.2 Cucumis melo HOM05D003468 ORTHO05D002806 9.3e-19 98.6 218 33.5
TPR.G28801 Trifolium pratense HOM05D003468 ORTHO05D002806 9.3e-19 98.6 188 35.6
Rhsim01G0242800 Rhododendron simsii HOM05D003468 ORTHO05D002806 1.2e-18 98.2 190 33.2
FAN21G2193 Fragaria x ananassa HOM05D003468 ORTHO05D002806 1.6e-18 97.8 191 33.5
QL02p029550 Quercus lobata HOM05D003468 ORTHO05D002806 2.1e-18 97.4 201 28.9
QL06p000163 Quercus lobata HOM05D003468 ORTHO05D002806 2.1e-18 97.4 201 28.9
VMungo0540G0681 Vigna mungo HOM05D003468 ORTHO05D002806 2.7e-18 97.1 208 33.7
TPR.G10431 Trifolium pratense HOM05D003468 ORTHO05D002806 3.5e-18 96.7 188 34.0
Cfa021527 Carpinus fangiana HOM05D003468 ORTHO05D002806 4.6e-18 96.3 192 31.8
FvH4_5g27240 Fragaria vesca HOM05D003468 ORTHO05D002806 4.6e-18 96.3 228 30.3
CANSAT25G2600 Cannabis sativa HOM05D003468 ORTHO05D002806 7.9e-18 95.5 197 33.0
FAN08G2580 Fragaria x ananassa HOM05D003468 ORTHO05D002806 7.9e-18 95.5 230 30.0
FAN18G3325 Fragaria x ananassa HOM05D003468 ORTHO05D002806 7.9e-18 95.5 228 30.3
FvH4_3g40451 Fragaria vesca HOM05D003468 ORTHO05D002806 1.0e-17 95.1 191 33.0
FAN11G0916 Fragaria x ananassa HOM05D003468 ORTHO05D002806 1.0e-17 95.1 191 33.0
Glyma.18G052700 Glycine max HOM05D003468 ORTHO05D002806 1.0e-17 95.1 216 32.9
MD03G1052200 Malus domestica HOM05D003468 ORTHO05D002806 1.0e-17 95.1 198 34.8
FAN13G0004 Fragaria x ananassa HOM05D003468 ORTHO05D002806 1.8e-17 94.4 228 30.3
FAN16G1667 Fragaria x ananassa HOM05D003468 ORTHO05D002806 3.0e-17 93.6 191 32.5
Haze_24464 Corylus avellana HOM05D003468 ORTHO05D002806 3.9e-17 93.2 199 31.2
Lsat_1_v5_gn_8_109320 Lactuca sativa HOM05D003468 ORTHO05D002806 3.9e-17 93.2 297 29.6
Nitab4.5_0000002g0180 Nicotiana tabacum HOM05D003468 ORTHO05D002806 5.1e-17 92.8 220 31.8
CANSAT54G1733 Cannabis sativa HOM05D003468 ORTHO05D002806 6.7e-17 92.4 201 32.8
Thecc.06G237700 Theobroma cacao HOM05D003468 ORTHO05D002806 8.7e-17 92.0 189 32.3
RcHm_v2.0_Chr7g0221541 Rosa chinensis HOM05D003468 ORTHO05D002806 1.5e-16 91.3 198 33.8
Actinidia34492 Actinidia chinensis HOM05D003468 ORTHO05D002806 1.9e-16 90.9 192 35.9
Hma1.2p1_0170F.1_g075010 Hydrangea macrophylla HOM05D003468 ORTHO05D002806 1.9e-16 90.9 231 31.6
MD11G1054300 Malus domestica HOM05D003468 ORTHO05D002806 2.5e-16 90.5 218 33.5
Phvul.006G078200 Phaseolus vulgaris HOM05D003468 ORTHO05D002806 4.3e-16 89.7 273 28.2
Nitab4.5_0002620g0010 Nicotiana tabacum HOM05D003468 ORTHO05D002806 7.4e-16 89.0 222 31.1
Lsat_1_v5_gn_9_13861 Lactuca sativa HOM05D003468 ORTHO05D002806 1.6e-15 87.8 193 33.7
CiPaw.14G050900 Carya illinoinensis HOM05D003468 ORTHO05D002806 3.7e-15 86.7 195 31.3
Cpa.g.sc85.113 Carica papaya HOM05D003468 ORTHO05D002806 1.1e-14 85.1 190 31.6
DCAR_026483 Daucus carota HOM05D003468 ORTHO05D002806 1.1e-14 85.1 255 28.6
HanXRQChr16g0522621 Helianthus annuus HOM05D003468 ORTHO05D002806 1.4e-14 84.7 271 29.5
SHI19247 Sapria himalayana HOM05D003468 ORTHO05D002806 4.1e-14 83.2 196 32.1
FvH4_5g00450 Fragaria vesca HOM05D003468 ORTHO05D002806 9.0e-14 82.0 192 30.2
FAN18G2440 Fragaria x ananassa HOM05D003468 ORTHO05D002806 9.0e-14 82.0 192 30.2
PGR129G0007 Punica granatum HOM05D003468 ORTHO05D002806 1.2e-13 81.6 193 33.2
Prupe.6G041700 Prunus persica HOM05D003468 ORTHO05D002806 2.6e-13 80.5 218 30.7
Duzib192G0804 Durio zibethinus HOM05D003468 ORTHO05D002806 5.9e-13 79.3 145 33.1
MSTRG.17916 Avicennia marina HOM05D003468 ORTHO05D002806 1.0e-12 78.6 207 30.4
Peaxi162Scf01078g00514 Petunia axillaris HOM05D003468 ORTHO05D002806 1.0e-12 78.6 190 32.6
C09p50220 Brassica napus HOM05D000295 ORTHO05D000188 2.9e-12 77.0 209 28.2
Manes.10G065600 Manihot esculenta HOM05D003468 ORTHO05D002806 2.9e-12 77.0 249 26.5
Aqoxy4G02393 Aquilegia oxysepala HOM05D003468 ORTHO05D002806 5.0e-12 76.3 195 31.8
Nitab4.5_0002091g0050 Nicotiana tabacum HOM05D003468 ORTHO05D002806 5.0e-12 76.3 206 29.1
Nitab4.5_0002759g0060 Nicotiana tabacum HOM05D003468 ORTHO05D002806 8.5e-12 75.5 153 34.6
Potri.013G154500 Populus trichocarpa HOM05D003468 ORTHO05D002806 1.1e-11 75.1 195 27.2
AL1G27830 Arabidopsis lyrata HOM05D009360 ORTHO05D002806 1.4e-11 74.7 214 26.2
BraA10t43633Z Brassica rapa HOM05D009360 ORTHO05D002806 1.4e-11 74.7 218 29.4
Aqoxy6G01245 Aquilegia oxysepala HOM05D003468 ORTHO05D002806 1.9e-11 74.3 217 29.5
A10p15910 Brassica napus HOM05D000295 ORTHO05D000188 1.9e-11 74.3 254 27.6
SGA_v2.0_scaffold120G32985 Striga asiatica HOM05D003468 ORTHO05D002806 4.2e-11 73.2 249 28.1
BcaC04g19876 Brassica carinata HOM05D009360 ORTHO05D002806 5.5e-11 72.8 153 31.4
FAN05G3624 Fragaria x ananassa HOM05D003468 ORTHO05D002806 5.5e-11 72.8 174 29.9
Nn2g10321 Nelumbo nucifera HOM05D003468 ORTHO05D002806 5.5e-11 72.8 185 32.4
Nn3g19626 Nelumbo nucifera HOM05D003468 ORTHO05D002806 5.5e-11 72.8 190 30.0
CAN.G874.78 Capsicum annuum HOM05D003468 ORTHO05D002806 9.4e-11 72.0 206 26.2
Peaxi162Scf00390g00336 Petunia axillaris HOM05D003468 ORTHO05D002806 9.4e-11 72.0 260 26.2
AT1G15720 Arabidopsis thaliana HOM05D009360 ORTHO05D002806 1.6e-10 71.2 193 25.9
BolC9t57878H Brassica oleracea HOM05D009360 ORTHO05D002806 2.1e-10 70.9 153 30.1
CDE07G0878 Ceratophyllum demersum HOM05D003468 ORTHO05D002806 2.1e-10 70.9 198 28.3
PGSC0003DMG400030385 Solanum tuberosum HOM05D003468 ORTHO05D002806 2.7e-10 70.5 155 32.9
CARHR016220 Cardamine hirsuta HOM05D009360 ORTHO05D002806 4.6e-10 69.7 193 24.9
Sp6g20000 Schrenkiella parvula HOM05D009360 ORTHO05D002806 4.6e-10 69.7 205 27.3
BcaB08g36171 Brassica carinata HOM05D009360 ORTHO05D002806 6.1e-10 69.3 229 26.2
Glyma.08G047700 Glycine max HOM05D003468 ORTHO05D002806 6.1e-10 69.3 67 52.2
TWI79G0734 Tripterygium wilfordii HOM05D003468 ORTHO05D002806 1.0e-09 68.6 201 27.9
BcaC05g29987 Brassica carinata HOM05D009360 ORTHO05D002806 1.8e-09 67.8 185 30.8
Gohir.A09G085500 Gossypium hirsutum HOM05D003468 ORTHO05D002806 3.9e-09 66.6 192 26.6
Migut.M01993 Erythranthe guttata HOM05D003468 ORTHO05D002806 5.1e-09 66.2 190 27.9
Sabra13G0124400 Salix brachista HOM05D003468 ORTHO05D002806 6.7e-09 65.9 195 26.2
Thecc.01G157400 Theobroma cacao HOM05D003468 ORTHO05D002806 6.7e-09 65.9 206 27.2
Gohir.D09G085500 Gossypium hirsutum HOM05D003468 ORTHO05D002806 1.1e-08 65.1 193 28.5
Gorai.006G101500 Gossypium raimondii HOM05D003468 ORTHO05D002806 1.1e-08 65.1 192 27.1
Peaxi162Scf00362g01055 Petunia axillaris HOM05D003468 ORTHO05D002806 1.9e-08 64.3 153 30.7
SGA_v2.0_scaffold77G25360 Striga asiatica HOM05D003468 ORTHO05D002806 3.3e-08 63.5 166 32.5
Thhalv10013531m.g Eutrema salsugineum HOM05D009360 ORTHO05D002806 4.3e-08 63.2 205 25.9
Carub.0008s1888 Capsella rubella HOM05D009360 ORTHO05D002806 5.7e-08 62.8 154 29.9
Thhalv10022421m.g Eutrema salsugineum HOM05D009360 ORTHO05D002806 5.7e-08 62.8 247 25.5
DCAR_017858 Daucus carota HOM05D003468 ORTHO05D002806 7.4e-08 62.4 153 34.0
Aa31LG1G28610 Aethionema arabicum HOM05D009360 ORTHO05D002806 2.2e-07 60.8 189 24.3
Sopen06g033890 Solanum pennellii HOM05D003468 ORTHO05D002806 2.2e-07 60.8 155 29.7
Lj1A121T44 Lonicera japonica HOM05D003468 ORTHO05D002806 2.8e-07 60.5 109 34.9
SalBow2G1693 Salvia bowleyana HOM05D003468 ORTHO05D002806 2.8e-07 60.5 202 28.2
Solyc06g082510.3 Solanum lycopersicum HOM05D003468 ORTHO05D002806 2.8e-07 60.5 222 26.1
COL.COLO4_33674 Corchorus olitorius HOM05D003468 ORTHO05D002806 3.1e-06 57.0 191 26.7


User provided reference genes

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