Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 8.5e-210 733.4 368 100.0
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 2.9e-173 612.1 368 84.5
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 1.4e-164 583.2 368 81.5
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 9.9e-150 533.9 368 76.1
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 1.5e-145 520.0 371 75.5
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 1.3e-144 516.9 369 75.1
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 4.0e-143 511.9 369 73.7
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 4.9e-141 505.0 370 72.7
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 2.8e-128 462.6 370 67.3
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 6.2e-128 461.5 340 71.8
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 2.7e-123 446.0 373 65.1
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 4.3e-121 438.7 370 62.4
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 1.6e-120 436.8 366 62.6
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 4.8e-120 435.3 370 62.2
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.1e-119 432.6 370 61.9
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 4.1e-119 432.2 366 63.1
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 5.3e-119 431.8 368 65.2
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.5e-118 428.7 370 60.8
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 4.5e-118 428.7 367 65.4
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 1.0e-117 427.6 368 61.7
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 1.7e-117 426.8 365 62.2
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 1.2e-115 420.6 369 63.4
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 7.9e-115 417.9 367 61.0
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 1.0e-114 417.5 370 61.4
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 1.8e-114 416.8 367 61.0
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 1.8e-114 416.8 366 60.9
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 2.2e-112 409.8 369 62.3
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 3.7e-112 409.1 368 59.5
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 3.1e-111 406.0 368 59.8
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 5.3e-111 405.2 367 59.4
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 6.9e-111 404.8 369 61.0
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 1.5e-110 403.7 348 61.5
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 3.4e-110 402.5 367 59.1
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 4.5e-110 402.1 366 59.6
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 4.5e-110 402.1 289 70.9
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 7.7e-110 401.4 348 61.2
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 2.9e-109 399.4 368 59.5
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 5.0e-109 398.7 343 63.3
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 6.5e-109 398.3 367 58.6
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 9.4e-108 394.4 399 57.6
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 1.6e-107 393.7 368 57.9
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 7.9e-107 391.3 289 68.2
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 1.8e-106 390.2 377 57.3
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 3.9e-106 389.0 367 55.9
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 5.1e-106 388.7 347 60.8
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 2.0e-105 386.7 373 57.4
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 7.4e-105 384.8 369 55.0
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 2.8e-104 382.9 417 53.0
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 7.0e-103 378.3 368 55.7
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 2.6e-102 376.3 370 53.0
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 3.4e-102 375.9 367 56.1
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 1.3e-101 374.0 366 56.8
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 1.3e-101 374.0 397 53.7
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 3.6e-99 365.9 368 53.8
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 3.6e-99 365.9 385 54.5
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 1.0e-98 364.4 370 57.3
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 1.4e-98 364.0 367 55.6
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 1.4e-98 364.0 293 64.5
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 8.8e-98 361.3 268 67.5
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 3.3e-97 359.4 373 52.3
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 1.7e-96 357.1 368 54.6
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 6.3e-96 355.1 290 61.7
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 2.4e-95 353.2 350 57.1
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 3.1e-95 352.8 368 53.5
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 5.3e-95 352.1 377 51.7
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 2.0e-94 350.1 368 53.3
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 4.2e-92 342.4 378 51.6
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 9.4e-92 341.3 366 52.2
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 1.6e-91 340.5 369 51.2
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 2.1e-91 340.1 368 50.5
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 2.7e-91 339.7 368 50.8
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 3.6e-91 339.3 368 52.2
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 6.1e-91 338.6 369 53.1
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 1.0e-90 337.8 369 50.4
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 2.3e-90 336.7 299 58.2
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 2.3e-90 336.7 368 51.6
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 3.0e-90 336.3 368 52.2
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 4.4e-89 332.4 367 50.7
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 5.7e-89 332.0 369 52.3
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 1.7e-88 330.5 366 50.8
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 2.8e-88 329.7 369 52.0
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 1.2e-86 324.3 366 48.4
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 2.0e-86 323.6 368 50.0
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 5.5e-84 315.5 393 47.3
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 1.2e-81 307.8 368 47.8
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 3.4e-81 306.2 370 46.2
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 2.8e-80 303.1 366 48.6
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 6.3e-80 302.0 341 52.5
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 8.3e-80 301.6 367 47.7
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 5.9e-78 295.4 373 47.5
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 5.9e-78 295.4 289 56.7
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 1.2e-73 281.2 368 46.7
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 7.5e-73 278.5 266 52.3
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 1.4e-71 274.2 201 65.2
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 9.2e-71 271.6 196 69.4
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 9.5e-68 261.5 333 44.7
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 4.4e-65 252.7 191 63.9
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 1.3e-61 241.1 168 70.8
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 2.3e-61 240.4 193 60.6
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 1.7e-53 214.2 320 39.4
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 3.4e-49 199.9 364 37.1
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 4.1e-47 193.0 268 38.4
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 3.9e-45 186.4 270 42.2
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 8.4e-40 168.7 110 71.8
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.7e-38 163.7 110 70.0
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 1.0e-37 161.8 177 56.5
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 8.7e-37 158.7 129 62.8
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 4.7e-35 152.9 134 61.9
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 6.2e-35 152.5 123 59.3
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.4e-34 151.4 123 58.5
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 1.1e-28 131.7 222 40.1
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 1.5e-28 131.3 123 56.1
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 2.0e-25 120.9 163 50.3
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 2.9e-24 117.1 176 37.5
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.2e-22 111.7 148 44.6
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 1.2e-22 111.7 220 37.3
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.3e-19 101.7 77 59.7
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 4.0e-18 96.7 69 63.8
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 5.8e-17 92.8 123 45.5
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 8.4e-16 89.0 61 65.6
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 9.3e-15 85.5 80 51.2
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 6.0e-14 82.8 282 27.7
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 6.2e-11 72.8 78 48.7
Duzib248G0391 Durio zibethinus HOM05D006199 ORTHO05D006558 2.7e-06 57.4 48 64.6
Psat7g019440 Pisum sativum HOM05D006199 ORTHO05D006558 6.1e-06 56.2 84 45.2
FvH4_4g05800 Fragaria vesca HOM05D006199 ORTHO05D006558 7.9e-06 55.8 58 44.8


User provided reference genes

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